Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_007145.2 Length=37639 Score E Sequences producing significant alignments: (Bits) Value seq1445 425 1e-114 >seq1445 Length=14432 Score = 425 bits (470), Expect = 1e-114 Identities = 956/1420 (67%), Gaps = 50/1420 (4%) Strand=Plus/Minus Query 4129 CTACATCGCGATCGACACCACGGGCATGGGGCAAGGCGTCTACCAGCTCGTGCGCAAGTT 4188 |||||||| |||||| | ||| |||| ||| ||||| ||||| ||| |||| Sbjct 13171 CTACATCGGGATCGATATCACCGGCACGGGTTCCGGCGTGGCGCAGCTGGTGAAGCAGTT 13112 Query 4189 CTTCCCGGCCGCCGTCGCGCTGAACTACTCGCCCGAGGTGAAAACCCGCCTCGTGCTCAA 4248 ||||||| | | | || | | |||||| ||||| || ||||||||||| ||||| || Sbjct 13111 CTTCCCGAACATCACCACGTTCAGCTACTCACCCGAAGTCAAAACCCGCCTGGTGCTGAA 13052 Query 4249 GGGCCAGTCCGTCGTCCGGAACGGCCGCCTGCAATTCGACGCGGGCTGGACCGATCTGGC 4308 || | |||| || |||||| | ||| | ||||| ||||||||||| ||| |||| Sbjct 13051 GGCTTACGACGTCATCAAAAACGGCAGGCTGGAGTTCGATGCGGGCTGGACGGATATGGC 12992 Query 4309 GGCGGCGTTCATGGCGATCAAACAGACGATGACGGCGAGCGGCCGTCAGGCGACCTACAC 4368 | | | || ||||| ||| | || || || || ||| || | || ||||| Sbjct 12991 GCAGTCATTGATGGCTATCCGCAAAACAATCACCGCCTCCGGGCGCATGTTCACTTACAC 12932 Query 4369 CGCCGGCCGCACCGACGAGACGGGCCACGCCGACCTGGCGTGGGCGTGCCTGCACGCGAT 4428 ||||| ||||| |||||||||||||| |||||||| ||||||||| | |||||| | Sbjct 12931 GGCCGGTCGCACAGACGAGACGGGCCATGCCGACCTAGCGTGGGCGCTGTTCCACGCGCT 12872 Query 4429 CGACCGCGAGCCGCTCGCCGG-----CGGCGGCATTCATTCATCTTCATTCACGGAGTTT 4483 || ||| || || | || | |||| || | ||| | ||||| Sbjct 12871 GCACAACGAACCCCTTGAAGGGCAGACCACGGCGAACA-----CCGGATTTATGGAGTCC 12817 Query 4484 TACGCATGAGCA------Agcgccgatcgc-gcgcgccgcgcacgttc-gcggccgcgcc 4535 ||| ||||||| ||||| || | | || ||| | || || || || || Sbjct 12816 TACTGATGAGCAGACGTAAGCGCGGAACCCAGCTGGCCAC---CGCTCAGCCACC-CGTT 12761 Query 4536 caatccgagcgccggcagcgccgcgccggcgcgtgccgAGGTCTTCACGTTCGACGATCC 4595 || || | || || | | | | | || | || | ||||| |||| ||||| Sbjct 12760 GAAGGGGATTTGCTGCCGC-CTGAGTCCGGGCCGGTTGAAGCGTTCACTTTCGGTGATCC 12702 Query 4596 GACGCCCGTCATGAA---CCGGGCCGAGATTCTCGATTACGTCGAGTGCTGGTCGAACGG 4652 | ||||| || | ||||| |||| ||||| ||| | ||||||||| | || || Sbjct 12701 CGCTCCCGTGTTGGATAGCCGGG---AGATCCTCGACTACCTGGAGTGCTGGGCCAATGG 12645 Query 4653 CGAATGGTTCGAGCCGCCGGTCAGCTTCGCCGGCCTGGCGAAATCGTTTCGCGCGAGCAC 4712 | ||||| || | ||| | | | | ||||||||||||| || || || ||| Sbjct 12644 CCGTTGGTTTGAAACACCGATGTCCATGGACGGCCTGGCGAAAACGACCCGGGCCAGCGT 12585 Query 4713 GCACCATAGCTCGGCGCTGTTCTTCAAGGCGAACGTGCTGGCGTCGACATTCCGCCCGCA 4772 | ||| |||| |||| ||||||| ||| |||| || || ||| || || Sbjct 12584 GTACCTCCAGTCGG-GCTGAACTTCAAGCGCAACATGCTTGCCCGCACGTTCGTTCCCCA 12526 Query 4773 CCGCTGGCTGTCG---CGGCACGCGTTCGAGCGGTGGGCGCTCGATTTCCTGACGTTCGG 4829 ||| ||||| | || || || || |||| || || || || | || || || Sbjct 12525 CCG---GCTGTTGAGTCGCCAAGCCTTTGAGCAGTTCGCCCTGGACTGGCTCTGGTGTGG 12469 Query 4830 CAACGGCTATCTGGAACGCCGCCGCAACATGGTCGGCGGCACGCTGCGGCTTGAGCCCGC 4889 |||| |||| |||||| ||| ||||||| || || ||| || | || ||| | Sbjct 12468 CAACTGCTACCTGGAAAAGCGCAACAACATGCTCCGCAACACCATGGGCCTGCTGCCTCC 12409 Query 4890 GCTCGCGAAGTACGTCCGGCGCAAGGCCGATTTCAACGGCTTCGTGTACGTGAACGGCTG 4949 || ||||||||| | || || | || | | || | ||| ||||| Sbjct 12408 ACTGGCGAAGTACATGCGCCGGGGTGTGGACATGGAGACCTATTACCAGGTGCGTGGCTG 12349 Query 4950 GCAGGAGCGGCACGAGTTCGAGCCCGACAGCGTGTTCCAGCT-CGTGCGGCCGGACATCA 5008 | |||| || || || | |||| | | ||| | || | ||||| | |||| Sbjct 12348 GAAGGACGAACATGAATTTGCCCCCGGTTCGATCTGCCACTTGCGCGAGGCCG-ATATCA 12290 Query 5009 ATCAGGAGGTCTACGGCCTGCCCGAGTATCTGAGCTCGCTGCACTCGGCCTGGCTGAACG 5068 | ||||| ||||||||||||| |||| ||| ||||||| || ||| |||| Sbjct 12289 ACCAGGAAATCTACGGCCTGCCGGAGTGGCTGGCAGCGCTGCAAAGCGCACTGCTCAACG 12230 Query 5069 A-ATCGTCGACGCTGTTCCGGCGCAAGTATTACGAGAACGGCAGCCACGCCGGCTTCATC 5127 | | || | |||||||||||||||||||| ||| | ||||||||||| ||||| ||||| Sbjct 12229 AGAGCGCC-ACGCTGTTCCGGCGCAAGTACTACAACAACGGCAGCCATGCCGGTTTCATT 12171 Query 5128 CTGTACATGACCGACGCCGCGCAGAAGCAGGACGACGTGGACAACATGCGCGACGCGCTG 5187 ||||||||||||||||| ||||||||| | || ||| | ||| ||||| ||| ||| Sbjct 12170 CTGTACATGACCGACGCGGCGCAGAAGGAAGAGGACATCGACTCACTGCGCACCGCACTG 12111 Query 5188 AAGAACGCGAAGGGGCCTGGCAACTTCCGCAACGTGTTCATGTACGCGCCGGGCGGGAAG 5247 |||||| |||| ||||| |||||||| |||||| |||| |||||||||||| || ||| Sbjct 12110 AAGAACTCGAAAGGGCCAGGCAACTTTCGCAACCTGTTTGTGTACGCGCCGGCAGGCAAG 12051 Query 5248 AAGGACGGCATCCAGCTCATCCCCGTGTCCGAGGTCGCCGCGAAGGACGAGTTCTTCAAC 5307 || |||||||| ||||||||||| ||| |||||| || || |||||||| ||| | Sbjct 12050 AAAGACGGCATTCAGCTCATCCCGGTGAGCGAGGTTGCGGCCAAGGACGAATTCAGCTCG 11991 Query 5308 ATCAAGAACGTGACGCGCGATGACCTGCTCGCCGCGCACCGCGTGCCGCCGCAGTTGCTT 5367 ||||| ||| | | || || || |||||||| ||| ||| | || ||||||||| | Sbjct 11990 ATCAAAAACATCAGCCGTGACGATCTGCTCGCGGCGTTGCGCATTCCACCGCAGTTGATG 11931 Query 5368 GGCATCGTGCCGAGCAATTCGGGCGGGTTCGGTAC---ACCGGACACCGCCGCGCGCGTG 5424 |||||||||||| || ||||||| || || | | ||| | || | | | Sbjct 11930 GGCATCGTGCCGCAGAACGCGGGCGGTTTTGGGTCGTTGCGGGAGGCTGCTGAG-----G 11876 Query 5425 TTCGGGCG--CAACGAAATCAGGCCGCTACAGGCGCGCTTCGCCGAGCTGAACGACTGGC 5482 || ||||| |||||| | |||| | |||||| | | ||| || | ||||| |||| Sbjct 11875 TTTGGGCGGTCAACGAGCTGGAGCCGTTGCAGGCGAGGCTGGCCCAGGTCAACGAGTGGC 11816 Query 5483 TCGGCGAGGAGGTCGTGAGGTTCGACGATTACGAGATTCC 5522 | || || ||||| || |||||| | || | ||| |||| Sbjct 11815 TGGGTGAAGAGGTTGTCAGGTTCAAGGAGTTTGAGCTTCC 11776 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 120312092213388