Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_007497.1 Length=44856 Score E Sequences producing significant alignments: (Bits) Value seq2008 125 2e-24 seq1422 111 5e-20 >seq2008 Length=9006 Score = 125 bits (138), Expect = 2e-24 Identities = 593/923 (64%), Gaps = 28/923 (3%) Strand=Plus/Minus Query 27396 GTACTGGTTCGCCGGGTCGTTATAGCTGACGAGCGCGACCGTGTACCGCGTCTTACGCTC 27455 ||| | |||| ||||| || |||||||| ||||| ||| | | |||| | ||||| Sbjct 8603 GTAGTTGTTCAGCGGGTTGTCGTAGCTGACCAGCGC--CCGGGAATAGCGTGTG-CGCTC 8547 Query 27456 -GCTGC---CGACATACCGGAACGAGCCATCGATCACGTTCGCCGCCGTGTACACGTACA 27511 | ||| ||| ||| |||| ||||||||| ||||||||| ||||| || | Sbjct 8546 CGATGCGCTCGA-ATAGGTGAACTTGCCATCGATGACGTTCGCCCGGGTGTAGGCGAAGT 8488 Query 27512 CCGGATCTGA------CGGCATGTCCGCCGATGCGACGACAGCTCCCGGCCCCCAGTAGG 27565 | || | |||||| |||| | | || ||| ||| | |||| |||| Sbjct 8487 CGAAGTCAGTGGCGCGCGGCATATCCGACAGGGTGAAGACTTGGCCCTGGGCCCAATAGG 8428 Query 27566 CGATGCCGCGGAACACGCTCGCGATGTCCTGCAACACCTTGAACGCGTCGGCCGCCGACT 27625 ||||| ||| | | ||| |||||| ||| || | | || || ||| || Sbjct 8427 TCATGCCTCGGTAAATCGTCGAGATGTCGCGCAGCAGCGACCATGCATCCGCCTTGCTCT 8368 Query 27626 GGATCACG--CAGTT-GCAGGCGAATCGCGGCTCGACGCCGCCTTTTCCGTCCGACACCA 27682 | || | ||| | |||| ||| ||||| || ||| || || |||| || ||||| Sbjct 8367 G---CAAGTTCAGATCGCAGATGAAACGCGGTTCCTGGCCACCCTTCCCGTTCGGCACCA 8311 Query 27683 TCACATCGCAGTAGCGCGCGATTTCGTACAGCCCCCACTTGTCGATCATCGATGCATCGA 27742 || ||||||||| ||| || ||||||| |||||||||||| |||| | | | || Sbjct 8310 TCTGATCGCAGTACTGCGAAATGCGGTACAGCTCCCACTTGTCGACCATCCACGGCTTGA 8251 Query 27743 CGGTCTTTCCGAGCCCGTAGCGCTCGTTCAACAGCAGGTCGTAGAAGATCCACGCGGGAT 27802 | ||||| ||| |||| ||||| ||| | ||| ||| | || | Sbjct 8250 TGCGACGGCCGAGGCCGAAGCGGTCGTTTGTGGTTAGGCCATAGGTATGCCAGACAGGGT 8191 Query 27803 TGTTCGTCCATGCCGGTTTGAACGTGCCGTCCCACGTGCCCGAGTACGTGCGCGTCTCAG 27862 ||| ||||||||| ||||| ||||| ||||| ||| ||||| |||||| || Sbjct 8190 TGTCGGTCCATGCCTCCTTGAATGTGCCATCCCAAACGCCAGAGTAGCTGCGCGATCGAG 8131 Query 27863 GATCGTAGTTCGACGGCACACG-CACGATCAGACCTCGAACGTGGTACGAGCGCACCGGG 27921 | ||||| || |||||| | ||| | | | ||| | || | | ||||| Sbjct 8130 GGTCGTAATTGCTCGGCACCTGCCACTTGCGGCCGTCGCAATCAATA-GTGACTGCCGGG 8072 Query 27922 A-CCTGCGAGAAC-GAGCGCGCGTCGAACGTCATACCCACGAGCGCAGTCATCGGATAGC 27979 | ||||| |||| | || ||| ||| ||| || | ||| || | ||||| | Sbjct 8071 ATACTGCG-GAACTGCTCG-GCGGAAAACTCGATATACAACAACGCGGTGTTTGGATACC 8014 Query 27980 GCAGCTTGCGGTCGATGATTTCGGTGATCGCCTCGATGTTCACCGTGTCGGCGATCAGCG 28039 ||||||| |||||| | || |||| | |||| | || |||||||| ||| Sbjct 8013 GCAGCTTCGCGTCGATCACCTCAGTGAAGCCGGCGATCTGCATCGTGTCGGAGATTTTGT 7954 Query 28040 AGCTGTGCGCATTCGGCGTAATGCGCCGCACGCGCACCAGCCAGCCGGATTTCGCACTCG 28099 | ||| | || ||| | |||| | ||||| ||||||||| || | || ||| Sbjct 7953 TGTTGTTCTGGTTGATCGTCAGGCGCGTGATGCGCATCAGCCAGCCAGAAGTAGCCTTCG 7894 Query 28100 GCAGCTCGATCCGATGGGAACGCTCGTACAGCGACGTCGTCTTGCCGTCAAAGGCGCCGC 28159 ||| ||||| || ||| |||||||||| || ||||||||||| | || ||| Sbjct 7893 GCAAATCGATGCGGCGGGTGCGCTCGTACACGCTGGTGGTCTTGCCGTCGACAGCTTCGC 7834 Query 28160 GCAGCACTTCCGCGTACGAGCCCCCGTCAACCGACAGGTCAATCGCATACTCGACTCGGT 28219 |||||| | | ||| | || ||||| | ||| |||| | ||||||| ||||| Sbjct 7833 TCAGCACCTGCTGGTAAGCACCGCCGTCGGTTGCCAGCTCAACCTTGTACTCGATTCGGT 7774 Query 28220 AGCCGAACACGCCGGACGAC-GGGTCACTCTTCTGCAGCGCAGGCACGCCGAAGCGAATA 28278 | ||| | | | || | | ||| ||| ||||| ||| | ||||||||| | Sbjct 7773 ACCCGTTGATG-TTGCCGCCAGCGTCTACGGACTGGAGCGCTGGCCAGGCGAAGCGAACA 7715 Query 28279 CGGACTGCCGTGAGCTGCGTGTT 28301 || || |||| ||||| |||| Sbjct 7714 CGAACGGCCGAAAGCTGGTTGTT 7692 >seq1422 Length=30787 Score = 111 bits (122), Expect = 5e-20 Identities = 218/314 (69%), Gaps = 20/314 (6%) Strand=Plus/Minus Query 39258 GCAGGCCGCCGCCGACGCGCTTCGTCGTGTAGAACAGTACGTACGGCTTCGCCGTGTACG 39317 ||| ||||||||| |||||||| || || |||||||| ||||| || || || | || | Sbjct 19889 GCACGCCGCCGCCCACGCGCTTGGTGGTATAGAACAGCACGTAGGGTTTGGCGGAATAGG 19830 Query 39318 GATCGCGCAGCACGCGAACCCCGATGCGGTCGATGATCAGATACGTCTGCTGGAAGTCGC 39377 |||||||||| || || |||||| |||| || | | |||||| | | ||| |||| Sbjct 19829 GATCGCGCAGGACCCGCACCCCGGTGCGATCCACCACCAGATAACCCCGGGCGAAATCGC 19770 Query 39378 CGAAGAGAATCGGCGTCGAGTTCGCCGCC-----ACATC--CGGCATGTCCGGCACCTCG 39430 ||||| ||| ||| || ||||||| |||| ||||| | | ||| Sbjct 19769 CGAAGGCAAT-GGC----AG--CGCCGCCGGTTGTCATCGGTGGCATCGCTTCTGCTTCG 19717 Query 39431 GT-AACCGGATAGCCCGCCAGCGTCGCCGGCTGCCCCGCTACGTACGACGGTTGCCAGAG 39489 || | ||||| ||||| ||| | ||| |||| || | | | | ||| |||||| Sbjct 19716 GTCAGCCGGA-AGCCCAGCAGTGAGGCCTGCTGGCCGGGTGCTGCGGGCGGCGTCCAGAG 19658 Query 39490 ATAGTTCCCTTGGCCGTCCTTCAGCTTCCGCAC--CTGACGCTGCGTGTTGCGGTTCATC 39547 |||||| || | |||||| ||||| ||||| ||| |||||| |||||||||||| Sbjct 19657 ATAGTTGCCGTCATTGTCCTTGAGCTTGCGCACGGCTG--CCTGCGTCTTGCGGTTCATC 19600 Query 39548 GCGAAGCGGGCGTT 39561 | ||| ||| || Sbjct 19599 ACCCAGCTGGCATT 19586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143404360224984