Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq540 102 7e-17 seq982 100 2e-16 seq322 96.9 3e-15 >seq540 Length=89862 Score = 102 bits (112), Expect = 7e-17 Identities = 163/232 (70%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGA--GTCCA 115343 |||||||||||||| ||||| | || || |||||||| || | ||| || || | Sbjct 84315 ATGCAAATTTTTGTTAAAACCTTGACCGGTAAAACCATCACATTAGAAGTTGAAGGTTCT 84374 Query 115344 GCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403 | |||| ||| | | || || ||||| ||||||||||| |||| |||| Sbjct 84375 G--ACACCATTGAAAATGTCAAGACCAAAATCCAAGATAAAGAAGGTATCCCACCCGATC 84432 Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463 | ||||||||||||| ||| || |||||||| ||||||| ||| | | ||||| | Sbjct 84433 AACAAAGACTTATTTTTGCCGGTAAACAATTGGAAGATGGTCGTACCCTCTCTGATTACA 84492 Query 115464 ACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAAA 115515 |||| |||||||| || || | ||| | || | ||||| |||| || || Sbjct 84493 ACATCCAAAAAGAATCAACCCTCCATCTCGTTCTTAGATTAAGAGGTGGTAA 84544 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||||||||| ||||| | || || ||||| || || | ||| ||| | Sbjct 83859 ATGCAAATTTTTGTTAAAACCTTGACCGGTAAAACAATCACATTAGAAGTTGAGGGCTCT 83918 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 ||||| ||| | | || || || || ||||||||||| |||| ||||| Sbjct 83919 GACACCATTGAAAACGTCAAGACCAAGATCCAAGATAAAGAAGGTATCCCACCCGATCAA 83978 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 ||||||||||||| ||| || |||||||| ||||||| ||| | | ||||||||| Sbjct 83979 CAAAGACTTATTTTTGCCGGTAAACAATTGGAAGATGGTCGTACCCTCTCTGATTATAAC 84038 Query 115466 ATTCAAAAAGAGTCTAC 115482 || |||||||| || || Sbjct 84039 ATCCAAAAAGAATCAAC 84055 Score = 95.1 bits (104), Expect = 1e-14 Identities = 163/235 (69%), Gaps = 4/235 (2%) Strand=Plus/Plus Query 115280 TTAAAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGA- 115338 || ||||||||||||||||| || || | || |||||||| || || | ||| || Sbjct 83625 TTTAAAATGCAAATTTTTGTAAAGACTTTAACCGGAAAAACTATCACATTAGAAGTTGAA 83684 Query 115339 -GTCCAGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCG 115397 || | | |||| ||| | | || || ||||| ||||||||||| |||| Sbjct 83685 GGTTCTG--ACACCATTGAAAATGTCAAGACCAAAATCCAAGATAAAGAAGGTATCCCAC 83742 Query 115398 TTGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCG 115457 || || |||||||| || | ||| || |||||||| ||||||| ||| | | | Sbjct 83743 CCGACCAACAAAGACTAATCTTTGCCGGTAAACAATTGGAAGATGGTCGTACCCTCTCTG 83802 Query 115458 ATTATAACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 |||||||||| ||||| || || || | ||| |||| | ||||| |||| || Sbjct 83803 ATTATAACATCCAAAAGGAATCAACCCTCCATTTGGTACTTAGATTAAGAGGTGG 83857 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGA--GTCCA 115343 |||||||| ||||| || || | || || ||||| || || | ||| || || | Sbjct 84087 ATGCAAATCTTTGTTAAGACCTTGACCGGTAAAACTATCACATTAGAAGTTGAAGGTTCT 84146 Query 115344 GCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403 | |||| ||| | | || || ||||| ||||||||||| |||| || | Sbjct 84147 G--ACACCATTGAAAATGTCAAGACCAAAATCCAAGATAAAGAAGGTATCCCACCCGACC 84204 Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463 | ||||||||||| | ||| || |||||||| ||||||| | ||| | | ||||||| Sbjct 84205 AACAAAGACTTATCTTTGCCGGTAAACAATTGGAAGATGGCCGTACCCTCTCTGATTATA 84264 Query 115464 ACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 |||| ||||| || || ||| | ||| | || | ||| | |||| || Sbjct 84265 ACATCCAAAAGGAATCAACTCTCCATTTAGTTCTCAGACTCAGAGGTGG 84313 >seq982 Length=41121 Score = 100 bits (110), Expect = 2e-16 Identities = 172/247 (70%), Gaps = 7/247 (3%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGA--GTCCA 115343 ||||||||||||||||| || | || || ||||| || ||| | || || || || Sbjct 2138 ATGCAAATTTTTGTCAAGACCTTGACCGGTAAAACTATCACCTTAGAGGTAGAAGGTTCA 2079 Query 115344 GCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403 | |||| ||| | | || || || || || |||||||| |||| |||| Sbjct 2078 G--ACACCATTGAAAACGTCAAGACCAAGATCCAAGACAAAGAAGGTATCCCACCCGATC 2021 Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463 | ||||||||||||| || || |||||||| ||||||| ||| | | ||||| | Sbjct 2020 AACAAAGACTTATTTTCGCTGGTAAACAATTGGAAGATGGTCGTACCCTCTCTGATTACA 1961 Query 115464 ACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA---AACCAC 115520 |||| |||||||| |||||| | ||| | || | ||| | |||| |||| || | | Sbjct 1960 ACATCCAAAAAGAATCTACTCTCCATTTAGTCCTCAGACTTAGAGGTGGAAACTAAACCC 1901 Query 115521 AATAAAA 115527 ||||||| Sbjct 1900 AATAAAA 1894 Score = 100 bits (110), Expect = 2e-16 Identities = 165/236 (70%), Gaps = 4/236 (2%) Strand=Plus/Minus Query 115279 ATTAAAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGA 115338 |||||| |||||||||||||| || || | || || ||||| || ||| | ||| || Sbjct 2829 ATTAAACATGCAAATTTTTGTAAAGACCTTGACCGGTAAAACAATCACCTTGGAAGTTGA 2770 Query 115339 --GTCCAGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCC 115396 || | | |||| ||| | | || || || ||| || |||||||| |||| Sbjct 2769 AGGTTCTG--ACACCATTGAAAATGTCAAGACCAAGATTCAAGACAAAGAAGGTATCCCA 2712 Query 115397 GTTGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCC 115456 |||||| ||||||||||||| || || |||||||||||||||| || | || Sbjct 2711 CCTGATCAACAAAGACTTATTTTCGCCGGTAAACAATTAGAAGATGGTCGTACTTTATCC 2652 Query 115457 GATTATAACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 || || ||||| |||||||| || ||| | ||| | || | ||| | |||| || Sbjct 2651 GACTACAACATCCAAAAAGAATCAACTCTCCATTTAGTCCTCAGACTTAGAGGTGG 2596 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGA--GTCCA 115343 ||||||||||||||||| || | || || ||||| || ||| | ||| || || | Sbjct 2594 ATGCAAATTTTTGTCAAGACCTTGACCGGTAAAACTATCACCTTGGAAGTTGAAGGTTCT 2535 Query 115344 GCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403 | |||| ||| | | || || || || || |||||||| |||| |||| Sbjct 2534 G--ACACCATTGAAAATGTCAAGACCAAGATCCAAGACAAAGAAGGTATCCCACCCGATC 2477 Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463 | ||||||||||||| || || |||||||| ||||||| || | |||| || | Sbjct 2476 AACAAAGACTTATTTTCGCTGGTAAACAATTGGAAGATGGTCGTACTTTATCCGACTACA 2417 Query 115464 ACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 |||||||||| || || || | ||| |||| | ||| | || || || Sbjct 2416 ACATTCAAAAGGAATCAACCCTCCATTTGGTACTTAGACTCCGTGGTGG 2368 >seq322 Length=112280 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGA--GTCCA 115343 ||||||||||||||||| || | || || ||||| |||||| | ||| || || | Sbjct 11233 ATGCAAATTTTTGTCAAGACCTTGACCGGTAAAACTATTACCTTAGAAGTTGAAGGTTCT 11292 Query 115344 GCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403 | |||| | | | | || ||| ||||| || |||||||| |||| |||| Sbjct 11293 G--ACACCATCGAAAACGTTAAAACCAAAATCCAAGACAAAGAAGGTATCCCACCCGATC 11350 Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463 | ||||||||||||| ||| || |||||||| ||||||| || | |||| || | Sbjct 11351 AACAAAGACTTATTTTTGCTGGTAAACAATTGGAAGATGGTCGTACTTTATCCGACTACA 11410 Query 115464 ACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 |||| |||||||| || ||| | ||| | || | ||| | || || || Sbjct 11411 ACATCCAAAAAGAATCAACTCTCCATTTAGTCCTCAGACTCCGTGGTGG 11459 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||||||||||||||| || | || || ||||| |||||| | ||| || | Sbjct 11917 ATGCAAATTTTTGTCAAGACCTTGACCGGTAAAACTATTACCTTAGAAGTTGAAGGCTCT 11976 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 ||||| ||| | | || || || || ||||| ||||| |||| ||||| Sbjct 11977 GACACCATTGAAAATGTCAAGACCAAGATCCAAGATAAGGAAGGTATCCCACCCGATCAA 12036 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 ||||||||||||| ||| || || ||||| ||||||| ||| | | || || ||| Sbjct 12037 CAAAGACTTATTTTTGCTGGTAAGCAATTGGAAGATGGTCGTACCCTCTCTGACTACAAC 12096 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAAA 115515 || |||||||| || ||| | ||| | || | ||| | |||| ||||| Sbjct 12097 ATCCAAAAAGAATCAACTCTCCATTTAGTCCTCAGACTTAGAGGTGGAAA 12146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425303700516880