Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_008194.1 Length=74483 Score E Sequences producing significant alignments: (Bits) Value seq2068 241 6e-59 seq848 188 3e-43 seq6252 116 2e-21 >seq2068 Length=4790 Score = 241 bits (266), Expect = 6e-59 Identities = 457/667 (69%), Gaps = 13/667 (2%) Strand=Plus/Plus Query 65403 CCACCGGCTCTATCGCTCTGGACGGCGCTCTGGGCATCGGGGGGTACCCGAGGGGCCGGG 65462 |||| |||||| | | ||||||| ||| || ||||| || || || | ||||| Sbjct 4130 CCACTGGCTCTCTGGGTCTGGACATCGCGCTCGGCATTGGCGGCCTGCCAAAAGGCCGTA 4189 Query 65463 TGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTATGTCTCCACGCGGTG- 65521 | || || |||||||| || |||||||| || || | || || | | || ||||| Sbjct 4190 TCGTTGAGATCTACGGTCCTGAATCTTCCGGTAAAACCACCCT--GAC-CCTGTCGGTGA 4246 Query 65522 --GCCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCACTCCCTGG 65579 ||| | || || || || | || | || | | |||| || |||||| |||||| Sbjct 4247 TTGCCCAGGCACAAAAAATGGGCGCCACCTGTGCGTTCGTCGATGCCGAGCACGCCCTGG 4306 Query 65580 ACCCTGAGTACGCCAAGGC--GCTCGGTGTGGACCTCGACAACCTCGTGGTGGTTCAGCC 65637 | ||||| |||||| ||| ||| || || || | ||| |||| |||| || || Sbjct 4307 ATCCTGAATACGCC--GGCAAGCTGGGCGTCAACGTTGACGACCTGCTGGTTTCGCAACC 4364 Query 65638 GGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAGCTGTC 65697 |||||| || ||||| || ||||| ||| ||| | || || || || | Sbjct 4365 GGACACCGGTGAGCAAGCGCTGGAAATCACCGACATGCTGGTGCGCTCCAACGCCATCGA 4424 Query 65698 CATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCGACAT 65757 | | |||| || ||||| ||||| |||||||| || || || |||||||||| || Sbjct 4425 CGTGATCGTGGTCGACTCCGTGGCAGCCCTGGTACCCAAGGCTGAAATCGAAGGCGAAAT 4484 Query 65758 CGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAGCTCAC 65817 || |||| ||||| ||||| || || ||| | ||||| |||||| |||| || |||| Sbjct 4485 GGGCGACATGCACGTGGGCCTTCAAGCCCGCTTGATGTCCCAGGCCCTGCGTAAAATCAC 4544 Query 65818 TGGCACCATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTGCGCGAGAAGAT 65877 || | |||| | | ||||| || | ||| |||||||| | || |||||| Sbjct 4545 CGGTAACATCAAGAACGCCAACTGCTTGGTGATCTTCATCAACCAGATCCGGATGAAGAT 4604 Query 65878 CGGCAACGTGGGCTACGGCCCGAACGAGACCACCACGGGCGGCAAGGCTTTGAGGTTCTA 65937 |||| || | | ||||| || |||||||| || || || || ||| |||||| Sbjct 4605 CGGCGTGATGTTCGGCAGCCCG---GAAACCACCACCGGGGGTAACGCGCTGAAGTTCTA 4661 Query 65938 CGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGATGAGGCTGT 65997 ||| || ||||| |||| ||||||| | | | | | ||||||||| || |||| ||| Sbjct 4662 CGCTTCGGTCCGTCTGGACATCCGTCGTACTGGCGCGGTGAAGGAAGGTGACGAGGTTGT 4721 Query 65998 CGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCCGCACCGCAACGC 66057 || | | ||||| || || ||||| ||||||||| ||||||||||| ||| | || Sbjct 4722 TGGTAGCGAAACCCGCGTTAAAGTCGTGAAGAACAAGGTGGCCCCGCCGTTCCGTCAGGC 4781 Query 66058 CGAGTTC 66064 ||||||| Sbjct 4782 CGAGTTC 4788 >seq848 Length=108724 Score = 188 bits (208), Expect = 3e-43 Identities = 402/598 (67%), Gaps = 7/598 (1%) Strand=Plus/Plus Query 65450 CCGAGGGGCCGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTATGT 65509 |||| ||||| | || || || ||||| || ||| || || ||| |||| || Sbjct 34642 CCGAAAGGCCGCATTGTCGAGATTTACGGGCCGGAAAGCTCGGGTAAGACAACCCTGGCG 34701 Query 65510 CTCCACGCGGTGGCCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAG 65569 || || || | || | || |||||| || |||| | ||||| | ||||||| || Sbjct 34702 CTGCATACGATTGCGGAAGCCCAGAAGAAGGGCGGCATCTGCGCCTTCGTCGACGCGGAA 34761 Query 65570 CACTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTG 65629 || | |||||||| | || ||| ||| || ||||| || || || || || | Sbjct 34762 CATGCGCTGGACCCGGTCTATGCCCGCAAGCTGGGCGTGGATCTGGAGAATCTGCTGATC 34821 Query 65630 GTTCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGC 65689 ||||| || || ||||||||||| ||||||||| ||| || || || || Sbjct 34822 TCGCAGCCCGATACGGGCGAGCAGGCGCTGGAGATCACCGACACGCTGGTGCGTTCCGGT 34881 Query 65690 GAGCTGTCCATCGTC--GTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCG 65747 | | | | || || || || || || || || || || ||||| || || ||| Sbjct 34882 GCGAT--CGATGTTCTGGTGGTCGATTCCGTTGCCGCTTTGACCCCGCGTGCGGAAATCG 34939 Query 65748 AAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGC 65807 ||||||| || || || || | ||||||||| || ||||| ||| ||||| ||| Sbjct 34940 AAGGCGAGATGGGCGATTCTCTCCCCGGCCTGCAGGCCCGCCTGATGAGCCAGGCGCTGC 34999 Query 65808 GCAAGCTCACTGGCACCATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTGC 65867 ||||||| || | |||| ||| | ||||| || | | |||||||| | | Sbjct 35000 GCAAGCTGACCGCATCCATTTCCCGTTCCAACTGCATGGTCATTTTCATCAACCAGATCC 35059 Query 65868 GCGAGAAGATCGGCAACGTGGGCTACGGCCCGAACGAGACCACCACGGGCGGCAAGGCTT 65927 || |||||||||| ||| | ||| || || ||||| ||||||||||| || Sbjct 35060 GCATGAAGATCGGC---GTGATGTTCGGTTCGCCTGAAACCACGACGGGCGGCAATGCGC 35116 Query 65928 TGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCG 65987 ||| ||||| || || || || | ||| |||| ||||||| | ||||||| | | Sbjct 35117 TGAAATTCTATGCTTCGGTGCGTCTCGATATCCGCCGCATCGGTGCGCTGAAGGAACGTG 35176 Query 65988 ATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCC 66045 | |||| |||||||||| ||||| || ||||| |||||||||||||| || || || Sbjct 35177 ACGAGGTGGTCGGCAACCAGACCCGCGTCAAGGTGGTCAAGAACAAGCTTGCGCCCCC 35234 >seq6252 Length=969 Score = 116 bits (128), Expect = 2e-21 Identities = 189/271 (70%), Gaps = 6/271 (2%) Strand=Plus/Minus Query 65928 TGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCG 65987 ||| ||||||||| || ||||| |||| ||||||| | | | | | ||||||||| | Sbjct 959 TGAAGTTCTACGCTTCGGTCCGTCTGGACATCCGTCGTACTGGCGCGGTGAAGGAAGGTG 900 Query 65988 ATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCCGC 66047 | |||| ||| || | | ||||| || || ||||| ||||||||| ||||||||||| Sbjct 899 ACGAGGTTGTTGGTAGCGAAACCCGCGTTAAAGTCGTGAAGAACAAGGTGGCCCCGCCGT 840 Query 66048 ACCGCAACGCCGAGTTCTCCGTCGTGTACGGGGAGGGCATCTCGCGTGAGGTCGAACTCC 66107 ||| | ||||||||| | | ||||| |||| |||| | | | ||| | Sbjct 839 TCCGTCAGGCCGAGTTCCAGATTCTCTACGGCAAGGGTATCTACCTGAACGGCGAGATGA 780 Query 66108 TCGACCTGGCCGTGTCGCAGGGCCTGGTGAAGAAGTCGGGCGCCTGGT---TCAAGTACG 66164 ||||||||| |||| ||| || | || |||| || || ||||||| | | ||| Sbjct 779 TCGACCTGGGCGTGCTGCACGGTTTCGTCGAGAAATCCGGTGCCTGGTATGCCTACAACG 720 Query 66165 GGGACAAGAACGTCGCTCAGGGCAAGCCCAA 66195 | ||||| ||| ||||||||| |||| Sbjct 719 GCAGCAAGA---TCGGCCAGGGCAAGGCCAA 692 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 238198229621416