Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_008201.1 Length=34525 Score E Sequences producing significant alignments: (Bits) Value seq1445 118 2e-22 >seq1445 Length=14432 Score = 118 bits (130), Expect = 2e-22 Identities = 359/547 (66%), Gaps = 6/547 (1%) Strand=Plus/Plus Query 466 TGATAACCTCTTGACCTAACCACTGATTAAACTCTTTCAATCGCTCTTGCAATGGCTCAA 525 ||| |||||||| ||| | ||||| || | || || | | | ||||| ||||| | Sbjct 11798 TGACAACCTCTTCACCCAGCCACTCGTTGACCTGGGCCAGCCTCGCCTGCAACGGCTCCA 11857 Query 526 TCTCGGTGATAAAAAACACCTCGGCAGCATCA-GCCACGTTGCCAAAACCGCCGGTGTTA 584 |||| ||| | ||||| ||||| || || ||| ||||||||||| | ||| Sbjct 11858 GCTCGTTGACCGCCCAAACCTCAGCAGCCTCCCGCAACGAC-CCAAAACCGCCCGCGTTC 11916 Query 585 TTTGGGATAATCCCCATCAGTTGTGGTGGCACACGGTGAGCAGCTAACACATCATCACGG 644 | || | || ||||||| || ||||| | || || || | || ||| |||||| Sbjct 11917 TGCGGCACGATGCCCATCAACTGCGGTGGAATGCGCAACGCCGCGAGCAGATCGTCACGG 11976 Query 645 CTCACGTTCTTGATATTAAAAAACTCATCTTTTGCCGACACATCAGCAATCGGAATAATC 704 || | ||| ||||| || || || || |||| || || | ||| || | | Sbjct 11977 CTGATGTTTTTGATCGAGCTGAATTCGTCCTTGGCCGCAACCTCGCTCACCGGGATGAGC 12036 Query 705 TGTATTCCATCTTTCTTGCCGTTTGGTGCGTGGACGAACAAGTTTTTAAAATTCCCCACC 764 || || || ||||||||||| || |||| || |||| ||| ||| || || | Sbjct 12037 TGAATGCCGTCTTTCTTGCCTGCCGGCGCGTACACAAACAGGTTGCGAAAGTTGCCTGGC 12096 Query 765 CCTTTTGACTGCTTGAGCTGCTG-GCGAATATTTTCAACATCTTCTTGTTTTTGTGACGC 823 ||||| || | ||| || ||| | ||| | || | || |||| || || | ||| Sbjct 12097 CCTTTCGAGTTCTTCAG-TGCGGTGCGCAGTGAGTCGATGTCCTCTTCCTTCTGCGCCGC 12155 Query 824 ATCGCTCATATAAAACACAAAGCCGGCGTGAGCT-CCATTTAAAAAATACTTACGGCGAA 882 ||| |||| || | | || ||||| || ||| || || | ||||| || || | Sbjct 12156 GTCGGTCATGTACAGAATGAAACCGGCATG-GCTGCCGTTGTTGTAGTACTTGCGCCGGA 12214 Query 883 ACAGAGTAGCACTCTCATTTAACCACGCAGATTGCAGGGCCGAAAGATATTGTGGCAAGC 942 |||| || || ||||| || | | || |||||| || | || | | |||| || Sbjct 12215 ACAGCGTGGCGCTCTCGTTGAGCAGTGCGCTTTGCAGCGCTGCCAGCCACTCCGGCAGGC 12274 Query 943 CGTAAATATCTTGATTAATATCAGGCTCAAGCAAGTGATAGATTGAGCCTTTGGCAAATT 1002 |||| || || || || ||||| | ||| ||||||| |||| || || |||||||| Sbjct 12275 CGTAGATTTCCTGGTTGATATCGGCCTCGCGCAAGTGGCAGATCGAACCGGGGGCAAATT 12334 Query 1003 CGTGTTC 1009 | ||||| Sbjct 12335 CATGTTC 12341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 110348212126356