Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq982 170 2e-37 seq322 163 2e-35 seq540 159 3e-34 seq391 111 1e-19 >seq982 Length=41121 Score = 170 bits (188), Expect = 2e-37 Identities = 176/228 (77%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||||||||| |||||||||||| | ||||| | ||||| || ||| Sbjct 2822 ATGCAAATTTTTGTAAAGACCTTGACCGGTAAAACAATCACCTTGGAAGTTGAAGGTTCT 2763 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || || | ||| | || | ||| ||||||||||| || |||||||| || Sbjct 2762 GACACCATTGAAAATGTCAAGACCAAGATTCAA-GACAAAGAAGGTATCCCACCTGATCA 2704 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| | ||||||| ||||| |||||||||||||||| ||| ||| | ||| ||||| Sbjct 2703 ACAAAGACTTATTTTCGCCGGTAAACAATTAGAAGATGGTCGTACTTTATCCGACTACAA 2644 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || ||||||||||| || || |||||||| || || || ||||| || Sbjct 2643 CATCCAAAAAGAATCAACTCTCCATTTAGTCCTCAGACTTAGAGGTGG 2596 Score = 161 bits (178), Expect = 9e-35 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||||||||| |||||||||||| | ||||| | ||||| || ||| Sbjct 2366 ATGCAAATCTTTGTAAAGACCTTGACCGGTAAAACAATCACCTTGGAAGTCGAAGGTTCT 2307 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| | ||| || ||| ||||||||||| || ||||| |||||| Sbjct 2306 GACACCATCGAAAACGTCAAGACCAAGATCCAAGACAAAGAAGGTATCCCACCCGACCAA 2247 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || | |||| |||||||| |||||||| ||||||| ||| ||| | ||| ||||| Sbjct 2246 CAAAGACTTATCTTTGCCGGTAAACAATTGGAAGATGGTCGTACTTTATCCGACTACAAC 2187 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || ||||| ||||| || || ||||| || || || ||||||| || Sbjct 2186 ATCCAAAAGGAATCAACCCTCCATTTGGTACTTAGATTAAGAGGTGG 2140 Score = 145 bits (160), Expect = 7e-30 Identities = 172/233 (74%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||| |||||||||||| | ||||| | || || || || Sbjct 2138 ATGCAAATTTTTGTCAAGACCTTGACCGGTAAAACTATCACCTTAGAGGTAGAAGGTTCA 2079 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || | ||| || ||| ||||||||||| || ||||| || ||| Sbjct 2078 GACACCATTGAAAACGTCAAGACCAAGATCCAAGACAAAGAAGGTATCCCACCCGATCAA 2019 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || | ||||||| || || |||||||| ||||||| ||| || | |||||||| Sbjct 2018 CAAAGACTTATTTTCGCTGGTAAACAATTGGAAGATGGTCGTACCCTCTCTGATTACAAC 1959 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAATTA 25231 || ||||||||||| || || |||||||| || || || ||||| ||||| || Sbjct 1958 ATCCAAAAAGAATCTACTCTCCATTTAGTCCTCAGACTTAGAGGTGGAAACTA 1906 Score = 141 bits (156), Expect = 8e-29 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||| |||||||||||| | ||||| | ||||| || ||| Sbjct 2594 ATGCAAATTTTTGTCAAGACCTTGACCGGTAAAACTATCACCTTGGAAGTTGAAGGTTCT 2535 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || | ||| || ||| ||||||||||| || ||||| || ||| Sbjct 2534 GACACCATTGAAAATGTCAAGACCAAGATCCAAGACAAAGAAGGTATCCCACCCGATCAA 2475 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || | ||||||| || || |||||||| ||||||| ||| ||| | ||| ||||| Sbjct 2474 CAAAGACTTATTTTCGCTGGTAAACAATTGGAAGATGGTCGTACTTTATCCGACTACAAC 2415 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216 |||||||| ||||| || || ||||| || || || || Sbjct 2414 ATTCAAAAGGAATCAACCCTCCATTTGGTACTTAGACT 2377 >seq322 Length=112280 Score = 163 bits (180), Expect = 2e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| ||||||||||| |||||||||||| | || || | ||||| || || Sbjct 11004 AATGCAAATCTTTGTAAAGACCTTGACCGGTAAAACTATTACCTTAGAAGTTGAAGGTTC 11063 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||| || || || | ||| |||||| ||||||||||| || ||||| ||||| Sbjct 11064 TGATACCATTGAAAATGTCAAGACCAAAATCCAAGACAAAGAAGGTATCCCACCCGACCA 11123 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| | |||||||||| || |||||||||||||||| ||| ||| | || ||||| Sbjct 11124 ACAAAGACTTATTTTTGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGACTACAA 11183 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || ||||||||||| || || |||||||| || | |||||||||| Sbjct 11184 CATCCAAAAAGAATCTACCCTTCATTTAGTACTCCGTTTAAGAGGAGG 11231 Score = 152 bits (168), Expect = 4e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||||||||| |||||||||||| | ||||| | ||||| || ||| Sbjct 11689 ATGCAAATCTTTGTAAAGACCTTGACCGGTAAAACAATCACCTTGGAAGTAGAAGGTTCT 11748 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || || || | ||| |||||| ||||||||||| || ||||| || ||| Sbjct 11749 GATACCATTGAAAACGTCAAGACCAAAATCCAAGACAAAGAAGGTATCCCACCCGATCAA 11808 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || | | |||||||| || |||||||||||||||| ||| ||| | || ||||| Sbjct 11809 CAAAGACTCATTTTTGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGACTACAAC 11868 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || ||||||||||| || || ||||| || || || ||||||| || Sbjct 11869 ATCCAAAAAGAATCAACACTCCATTTGGTACTTAGATTAAGAGGTGG 11915 Score = 150 bits (166), Expect = 2e-31 Identities = 164/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||| |||||||||||| | || || | ||||| || ||| Sbjct 11233 ATGCAAATTTTTGTCAAGACCTTGACCGGTAAAACTATTACCTTAGAAGTTGAAGGTTCT 11292 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| | || |||||| ||||||||||| || ||||| || ||| Sbjct 11293 GACACCATCGAAAACGTTAAAACCAAAATCCAAGACAAAGAAGGTATCCCACCCGATCAA 11352 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || | |||||||||| || |||||||| ||||||| ||| ||| | ||| ||||| Sbjct 11353 CAAAGACTTATTTTTGCTGGTAAACAATTGGAAGATGGTCGTACTTTATCCGACTACAAC 11412 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216 || ||||||||||| || || |||||||| || || || Sbjct 11413 ATCCAAAAAGAATCAACTCTCCATTTAGTCCTCAGACT 11450 Score = 149 bits (164), Expect = 5e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||||||||| |||||||||||| | || || | ||||| || ||| Sbjct 11461 ATGCAAATCTTTGTAAAGACCTTGACCGGTAAAACTATTACCTTAGAAGTTGAAGGTTCT 11520 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || || ||| | ||| || ||| ||||||||||| || ||||| |||||| Sbjct 11521 GATACCATTGAGAATGTAAAGACCAAGATCCAAGACAAAGAAGGTATCCCACCCGACCAA 11580 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || | | |||||||| || |||||||||||||| | ||| || | || ||||| Sbjct 11581 CAAAGACTCATTTTTGCTGGTAAACAATTAGAAGACGGTCGTACCCTCTCTGACTACAAC 11640 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || ||||||||||| || || |||||||| || || || ||||| || Sbjct 11641 ATCCAAAAAGAATCTACTCTCCATTTAGTTCTCAGACTTAGAGGTGG 11687 Score = 141 bits (156), Expect = 8e-29 Identities = 171/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||| |||||||||||| | || || | ||||| || ||| Sbjct 11917 ATGCAAATTTTTGTCAAGACCTTGACCGGTAAAACTATTACCTTAGAAGTTGAAGGCTCT 11976 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || | ||| || ||| || || ||||| || ||||| || ||| Sbjct 11977 GACACCATTGAAAATGTCAAGACCAAGATCCAAGATAAGGAAGGTATCCCACCCGATCAA 12036 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || | |||||||||| || || ||||| ||||||| ||| || | || ||||| Sbjct 12037 CAAAGACTTATTTTTGCTGGTAAGCAATTGGAAGATGGTCGTACCCTCTCTGACTACAAC 12096 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAATTA 25231 || ||||||||||| || || |||||||| || || || ||||| |||||||| Sbjct 12097 ATCCAAAAAGAATCAACTCTCCATTTAGTCCTCAGACTTAGAGGTGGAAATTA 12149 >seq540 Length=89862 Score = 159 bits (176), Expect = 3e-34 Identities = 175/233 (75%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| || || |||||||||||| |||||||| | ||||| || ||| Sbjct 84315 ATGCAAATTTTTGTTAAAACCTTGACCGGTAAAACCATCACATTAGAAGTTGAAGGTTCT 84374 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || | ||| |||||| || |||||||| || ||||| || ||| Sbjct 84375 GACACCATTGAAAATGTCAAGACCAAAATCCAAGATAAAGAAGGTATCCCACCCGATCAA 84434 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || | ||||||||||||| |||||||| ||||||| ||| || | |||||||| Sbjct 84435 CAAAGACTTATTTTTGCCGGTAAACAATTGGAAGATGGTCGTACCCTCTCTGATTACAAC 84494 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAATTA 25231 || ||||||||||| || || ||| | || || || ||||||| || ||||| Sbjct 84495 ATCCAAAAAGAATCAACCCTCCATCTCGTTCTTAGATTAAGAGGTGGTAATTA 84547 Score = 152 bits (168), Expect = 4e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| || || |||||||||||| | |||||| | ||||| ||| ||| Sbjct 83859 ATGCAAATTTTTGTTAAAACCTTGACCGGTAAAACAATCACATTAGAAGTTGAGGGCTCT 83918 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || | ||| || ||| || |||||||| || ||||| || ||| Sbjct 83919 GACACCATTGAAAACGTCAAGACCAAGATCCAAGATAAAGAAGGTATCCCACCCGATCAA 83978 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || | ||||||||||||| |||||||| ||||||| ||| || | ||||| || Sbjct 83979 CAAAGACTTATTTTTGCCGGTAAACAATTGGAAGATGGTCGTACCCTCTCTGATTATAAC 84038 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || ||||||||||| || || |||||||| || || || ||||| || Sbjct 84039 ATCCAAAAAGAATCAACCCTTCATTTAGTCCTCAGACTTAGAGGTGG 84085 Score = 149 bits (164), Expect = 5e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||| |||||||||||| | |||||| | ||||| || ||| Sbjct 84087 ATGCAAATCTTTGTTAAGACCTTGACCGGTAAAACTATCACATTAGAAGTTGAAGGTTCT 84146 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || | ||| |||||| || |||||||| || ||||| |||||| Sbjct 84147 GACACCATTGAAAATGTCAAGACCAAAATCCAAGATAAAGAAGGTATCCCACCCGACCAA 84206 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || | |||| |||||||| |||||||| ||||||| || || | ||||| || Sbjct 84207 CAAAGACTTATCTTTGCCGGTAAACAATTGGAAGATGGCCGTACCCTCTCTGATTATAAC 84266 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || ||||| ||||| || || |||||||| || || || ||||| || Sbjct 84267 ATCCAAAAGGAATCAACTCTCCATTTAGTTCTCAGACTCAGAGGTGG 84313 Score = 145 bits (160), Expect = 7e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| |||||||||||||| ||||| ||| | |||||| | ||||| || || Sbjct 83630 AATGCAAATTTTTGTAAAGACTTTAACCGGAAAAACTATCACATTAGAAGTTGAAGGTTC 83689 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 |||||| || || | ||| |||||| || |||||||| || ||||| ||||| Sbjct 83690 TGACACCATTGAAAATGTCAAGACCAAAATCCAAGATAAAGAAGGTATCCCACCCGACCA 83749 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| | | || |||||||| |||||||| ||||||| ||| || | ||||| || Sbjct 83750 ACAAAGACTAATCTTTGCCGGTAAACAATTGGAAGATGGTCGTACCCTCTCTGATTATAA 83809 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || ||||| ||||| || || ||||| || || || ||||||| || Sbjct 83810 CATCCAAAAGGAATCAACCCTCCATTTGGTACTTAGATTAAGAGGTGG 83857 >seq391 Length=66319 Score = 111 bits (122), Expect = 1e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 25026 GGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTGAAGCAAAAA 25085 ||||| | || || ||||||| ||| || ||||| ||||| | ||| ||| Sbjct 37409 GGTAAGACGATTACTCTCGAAGTAGAGGGATCAGACACCATCGAAAACGTCAAGGCTAAA 37350 Query 25086 ATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAA 25145 ||| ||||||||||| || || || || ||||| | |||| ||||| || |||||| Sbjct 37349 ATCCAAGACAAAGAAGGTATCCCCCCCGATCAACAAAGACTTATCTTTGCTGGTAAACAA 37290 Query 25146 TTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTA 25205 |||||||||| ||| ||| | |||||||| || ||||| ||||| || || |||||| Sbjct 37289 TTAGAAGATGGTCGTACTTTACAAGATTACAACATCCAAAAGGAATCAACCCTCCATTTA 37230 Query 25206 GTGCTAAGGCT 25216 || || || || Sbjct 37229 GTTCTCAGACT 37219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433286944067810