Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq54 232 7e-56 seq3596 176 5e-39 seq222 154 2e-32 >seq54 Length=99412 Score = 232 bits (256), Expect = 7e-56 Identities = 612/917 (67%), Gaps = 23/917 (3%) Strand=Plus/Minus Query 92802 TTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCGA 92861 |||||||||||| || || ||||||||||||||| || || |||| | || ||| Sbjct 88915 TTTTTGGTATTCACCTACGCGTTTTTCAAAGAAATTGGTTTTCCCTTGTAGGGAGATCAT 88856 Query 92862 ATTCACTA-GT-GATTGGATTCTTGGCGTTATAATACTTTTCACCGATC-AACTCGTACA 92918 | || | || || |||||| | |||| || ||| || | | | || || | Sbjct 88855 CTCCATAAAGTCGAATGGATTGGTCACGTTGTA-TACCTTAGAACACCCTAATTCAAGTA 88797 Query 92919 ATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAA 92978 |||| | |||||| ||||| || |||||||| |||||| || |||||| || | | Sbjct 88796 ATAACCGATCAGCGACAAACTCGATGTACTGTTTCATCAAGTCGGCATTCATGCCAATGA 88737 Query 92979 GACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGA 93038 | ||||||| || || || | || || | || ||| | || || || | | | Sbjct 88736 GCTTAACAGGTAATGCATCAGTGACAAATTCCTGTTCAATTGCTACTGCATCGGTAATAA 88677 Query 93039 TTTCTATTACTCTACTATTTGGTGGTT---TTTGTACGACATAATTGTACATTAAGCACG 93095 ||||| |||| || | ||| ||| ||| || | | | |||| || ||| | Sbjct 88676 TTTCTTTTACCCTTTCTTGTGGAAGTTGATTTTTTAAGTGCTTGGTATACAATAGGCAAG 88617 Query 93096 CAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTG 93155 ||||||| ||| || |||||||| | || || | || ||| ||| | | ||| | Sbjct 88616 CAAAGTCACAATGCAATCCTTCGTCCCTAGAAATGAGTTCGTTGGAGAAGCTAAGACCGG 88557 Query 93156 GTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAA-CTACCAGaaaaaaaTATA 93214 | | | ||| | ||| |||||||| || || || |||||| |||||||| || || || Sbjct 88556 GCATTAATCCCCTTTTTTTGAGCCAGAAGATCGA-GCAAAAGCTACCAGAGAAGAAAATG 88498 Query 93215 CCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATC 93274 ||||| || |||||||| || | | | ||| |||||| | || || | || ||| Sbjct 88497 CCTTCTACAGCTGCAAAGGCAATGAGTCTTTCAGCAAAACTCGC----TTGGT-CT-ATC 88444 Query 93275 CATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAAT 93334 || ||||||||| || ||||||||||||| ||| || || ||||| || || || Sbjct 88443 CAACGTAAAGCCCATTCTGCTTTTTTCTTAACACAGTCGAGGGTGTCGATGGCATTGAAA 88384 Query 93335 AGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCA 93394 ||| || || || | | ||| ||||| ||||| || | || ||||| |||| Sbjct 88383 AGGCGATTTCTTTCTTGAGGATCCTTAATGTAGGTATCAATGAGGAGTGAATAGGTTTCT 88324 Query 93395 GAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGC 93454 ||||||| |||||| | ||||| ||||| || || || || | || || || ||| Sbjct 88323 GAATGGATATTCTCTACAGCAATCTGGAAGCCATAAAAGAATTTGGCCTCTGTATACTGT 88264 Query 93455 ACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaa 93514 ||||| ||| | ||| | | ||||||||| || ||||| || |||||||| Sbjct 88263 ACTTCAGCTACAAAGTTTTCTGCTAAATTTTCATTAACAATACCGTCACTAGCTGCAAAG 88204 Query 93515 aaaGCCAATATATGCTTTATAAAATGTTTCTCATC-ATCTTTAAGCTTATCCCAATCGGA 93573 |||||||||| || ||||| ||| ||||| | || |||| |||| || Sbjct 88203 AAAGCCAATACGTGAGAGATAAAGTGTCGTTCATCGTTATTCAAGC-GGGCCCAGTCTTT 88145 Query 93574 TAGATCTT---TTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTT 93630 || |||| || ||| || | || || | |||||||| ||||||||||| || Sbjct 88144 GAGGTCTTGACTT--AAG-TCAATCTCCTCAGCGGTCCAAAAGCTAGCTTCTGCTTTCTT 88088 Query 93631 GTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATC 93690 || | | |||||| || |||| || || || |||| ||||| ||||| || || Sbjct 88087 ATAAAAGTTCCATATATCATGATGTTCGATAGGGAATAATACAAATCGATTTTTATTTTC 88028 Query 93691 TTTTAGTAACGGCTCTA 93707 || || | ||||||| Sbjct 88027 TTGTAAAATAGGCTCTA 88011 >seq3596 Length=2072 Score = 176 bits (194), Expect = 5e-39 Identities = 396/590 (67%), Gaps = 10/590 (2%) Strand=Plus/Plus Query 93091 GCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAA 93150 ||| ||||| || ||| | || || |||| || ||||||||||| || || |||| Sbjct 36 GCAGGCAAATTCACAATGCATCCCCTCATCTCTGGAAATCAACTCATTACTAAAGGTTAG 95 Query 93151 ACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaa 93210 ||||| | ||| |||| ||| || | ||| || || ||| || || || || || Sbjct 96 CCCTGGCATCAGGCCTCTTTTTTTCAACCAGAAGATCGAACAGAAGCTCCCGCTGAAGAA 155 Query 93211 TATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCT 93270 || |||||||| || || || ||||| | |||||||||||||||| || | | Sbjct 156 AATGCCTTCCACTGCGGCGAAAGCCACCAAACGTTCGGCAAAATTTCCGCCCTCA----- 210 Query 93271 GATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTT 93330 ||||| || ||||| || ||||||||||| | |||||| | || || | || | Sbjct 211 -ATCCAGCGCAATGCCCATTCTGCTTTTTTCTTTACACAAGGAACCGTCTCTACGGCATG 269 Query 93331 AAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACAT 93390 || || ||| || || | |||| || || |||||||| | ||| | ||| | Sbjct 270 GAACAGCCTGTCTTTTTCTTCAGGATCTTTAATATAGGTATCGATCAGCAGCGCATAGGT 329 Query 93391 TTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGAT 93450 |||||| |||| || ||||| || ||||| || || ||||| | ||||| | | Sbjct 330 TTCAGAGTGGATGTTTTCCATCATGATCTGGAAGCCATAAAAACAACGGGCTTCGGGAAG 389 Query 93451 CTGCACTTC-TTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTG 93509 ||| ||||| | | || | || || | || |||||||| || || || || ||| | Sbjct 390 CTGTACTTCGCTCATGAAGT-TCACTGCAAGGTTTTCATTTACAATGCCGTCACTTGCAG 448 Query 93510 CaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATC-ATCTTTAAGCTTATCCCAA 93568 |||||||||| | |||||| || ||||| ||| | | |||||| || ||||| Sbjct 449 CAAAAAAAGCAAGTATATGAGAAATGAAATGACGCTCGCCTGTATTTAAG-TTGTCCCAG 507 Query 93569 TCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTT 93628 | | || | ||||| || | |||||| | ||||| || |||||| || Sbjct 508 TGCTTCTGGTCATCAGAAAGGTCAATTTCTTCAGCGGTCCAGAAACTTGCTTCACTCTTC 567 Query 93629 TTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACG 93678 || ||||| ||||| || || | |||| ||| || || | ||||| || Sbjct 568 TTATACATTTCCCAGATTTCAGGGTATTTAATAGGCAAAAGAACAAAGCG 617 >seq222 Length=228455 Score = 154 bits (170), Expect = 2e-32 Identities = 216/299 (72%), Gaps = 7/299 (2%) Strand=Plus/Plus Query 93082 GTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCG--TGATATCAACTCATTG 93139 ||| | ||| || ||||| | |||||||||||| || || ||||| | |||||| Sbjct 135063 GTAGAGTAAACAGGCAAAATTACAATGTAAACCTTCATCACGACTGATA--AGTTCATTG 135120 Query 93140 CTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTA 93199 || || || ||||| | || ||||| || || | ||| || || ||| |||||| Sbjct 135121 GAAAAAGTCAATCCTGGCATCAATCCTCTCTTTTTCAACCAGAAAATCGAACAAAAACTG 135180 Query 93200 CCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCG 93259 ||| ||| ||||||||||| ||||||||||| || || | |||||| |||||| | Sbjct 135181 CCACTAAAGAATATACCTTCTACGGCTGCAAAAGCTACCAAACGTTCAGCAAAAGATTTT 135240 Query 93260 GAATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTT 93319 ||||| || | |||||| | || |||||||| ||||| ||||| | ||| || | |||| Sbjct 135241 GAATT--TG-TAATCCATCTCAATGCCCAATCAGCTTTCTTCTTTACACATGGAATTGTT 135297 Query 93320 TCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAA 93378 || ||||| |||||||| | | || || | || | || |||||||||||||| Sbjct 135298 TCAATAGCATTAAATAGTCTAGTTTTTTCATCTGGATTTTTAATATATGTATCGATTAA 135356 Score = 136 bits (150), Expect = 4e-27 Identities = 206/288 (72%), Gaps = 5/288 (2%) Strand=Plus/Plus Query 93392 TCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATC 93451 || ||||| | ||| || ||||||||||| || || |||||||| | |||||| | || Sbjct 135460 TCGGAATGAATATTTTCAATTGCAATTTGAAAACCATAGAAACAACGAGCTTCTGGAATT 135519 Query 93452 TGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCa 93511 || ||||| ||| | | | ||||||||| || ||||| || |||||| Sbjct 135520 TGAACTTCACTCATGAATTTGGTGGCTAAATTTTCATTAACGATACCGTCACTGGCTGCA 135579 Query 93512 aaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATC-TTTAA--GCTTATCCCAA 93568 || ||||| | | ||| ||||||||| | |||| ||| ||||| || |||||| Sbjct 135580 AAGAAAGCTAGAACATGAGAGATAAAATGTCTTTCATTATCGTTTAATTTATTCTCCCAA 135639 Query 93569 TCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTT 93628 || | | ||| |||| |||||||| ||| || | |||||||| || ||||| || || Sbjct 135640 TCATAGATATCATTTGCAAGATCGATTTCCTCTGCTGTCCAAAATGAAGCTTCAGCATTC 135699 Query 93629 TTGTACATAT-CCCATATGTCTTGATATTGAATTGGAAATATGACAAA 93675 ||||| |||| |||| || || ||||| |||||| |||| ||||| Sbjct 135700 TTGTA-ATATGCCCAAATATCACTATATTTAATTGGGAATAATACAAA 135746 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556806687051760