Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq540 168 6e-37 seq982 156 4e-33 seq322 154 1e-32 seq391 111 1e-19 >seq540 Length=89862 Score = 168 bits (186), Expect = 6e-37 Identities = 168/218 (77%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||||||||| || ||||||||||| |||| | ||||| ||| | Sbjct 84315 ATGCAAATTTTTGTTAAAACCTTGACCGGTAAAACCATCACATTAGAAGTTGAAGGTTCT 84374 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || |||| ||||| ||||| || || ||||| |||||||||||| Sbjct 84375 GACACCATTGAAAATGTCAAGACCAAAATCCAAGATAAAGAAGGTATCCCACCCGATCAA 84434 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | ||||| |||||||| ||||| || || ||| || ||| |||| ||||||||| Sbjct 84435 CAAAGACTTATTTTTGCCGGTAAACAATTGGAAGATGGTCGTACCCTCTCTGATTACAAC 84494 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATT 22436 || ||||||||||| ||| | ||| | ||| | |||| Sbjct 84495 ATCCAAAAAGAATCAACCCTCCATCTCGTTCTTAGATT 84532 Score = 161 bits (178), Expect = 8e-35 Identities = 161/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||||||||| || ||||||||||| |||| | ||||| || | | Sbjct 83859 ATGCAAATTTTTGTTAAAACCTTGACCGGTAAAACAATCACATTAGAAGTTGAGGGCTCT 83918 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | |||| || || ||||| || || ||||| |||||||||||| Sbjct 83919 GACACCATTGAAAACGTCAAGACCAAGATCCAAGATAAAGAAGGTATCCCACCCGATCAA 83978 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | ||||| |||||||| ||||| || || ||| || ||| |||| ||||| ||| Sbjct 83979 CAAAGACTTATTTTTGCCGGTAAACAATTGGAAGATGGTCGTACCCTCTCTGATTATAAC 84038 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 || ||||||||||| ||| | |||||||| Sbjct 84039 ATCCAAAAAGAATCAACCCTTCATTTAGT 84067 Score = 156 bits (172), Expect = 4e-33 Identities = 169/223 (76%), Gaps = 1/223 (0%) Strand=Plus/Plus Query 22205 ATACATTTGTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTG 22264 ||| |||| |||| |||||||||||||| || ||||||||||| ||||| |||| | | Sbjct 83618 ATATATTTTTAAA-ATGCAAATTTTTGTAAAGACTTTAACCGGAAAAACTATCACATTAG 83676 Query 22265 AAGTGGAAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTA 22324 |||| ||| | || ||| | || || |||| ||||| ||||| || || |||| Sbjct 83677 AAGTTGAAGGTTCTGACACCATTGAAAATGTCAAGACCAAAATCCAAGATAAAGAAGGTA 83736 Query 22325 TTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCG 22384 | |||||||| |||||| | || || |||||||| ||||| || || ||| || ||| Sbjct 83737 TCCCACCCGACCAACAAAGACTAATCTTTGCCGGTAAACAATTGGAAGATGGTCGTACCC 83796 Query 22385 TCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGT 22427 |||| ||||| ||||| ||||| ||||| ||| | ||||| || Sbjct 83797 TCTCTGATTATAACATCCAAAAGGAATCAACCCTCCATTTGGT 83839 Score = 154 bits (170), Expect = 1e-32 Identities = 160/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| |||||||| || || ||||||||||| |||| | ||||| ||| | Sbjct 84087 ATGCAAATCTTTGTTAAGACCTTGACCGGTAAAACTATCACATTAGAAGTTGAAGGTTCT 84146 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || |||| ||||| ||||| || || ||||| |||||||| ||| Sbjct 84147 GACACCATTGAAAATGTCAAGACCAAAATCCAAGATAAAGAAGGTATCCCACCCGACCAA 84206 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | ||||| |||||||| ||||| || || ||| ||| ||| |||| ||||| ||| Sbjct 84207 CAAAGACTTATCTTTGCCGGTAAACAATTGGAAGATGGCCGTACCCTCTCTGATTATAAC 84266 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTT 22428 || ||||| ||||| || | ||||||||| Sbjct 84267 ATCCAAAAGGAATCAACTCTCCATTTAGTT 84296 >seq982 Length=41121 Score = 156 bits (172), Expect = 4e-33 Identities = 163/214 (76%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 22214 TAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAA 22273 |||| |||||||||||||| || || || ||||||||||| |||| | ||||| ||| Sbjct 2827 TAAACATGCAAATTTTTGTAAAGACCTTGACCGGTAAAACAATCACCTTGGAAGTTGAAG 2768 Query 22274 CCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCG 22333 | || ||| | || || |||| || ||||||||||| || ||||| ||||| | Sbjct 2767 GTTCTGACACCATTGAAAATGTCAAGACCAAGATTCAAGACAAAGAAGGTATCCCACCTG 2708 Query 22334 ATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATT 22393 |||||||| | ||||| || ||||| ||||| ||||| ||| || || | ||||| | Sbjct 2707 ATCAACAAAGACTTATTTTCGCCGGTAAACAATTAGAAGATGGTCGTACTTTATCCGACT 2648 Query 22394 ACAACATTCAAAAAGAATCCACCATACATTTAGT 22427 ||||||| ||||||||||| || | |||||||| Sbjct 2647 ACAACATCCAAAAAGAATCAACTCTCCATTTAGT 2614 Score = 143 bits (158), Expect = 2e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| || || || ||||||||||| |||| | || || ||| | Sbjct 2138 ATGCAAATTTTTGTCAAGACCTTGACCGGTAAAACTATCACCTTAGAGGTAGAAGGTTCA 2079 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | |||| || || |||||||| || ||||| |||||||||||| Sbjct 2078 GACACCATTGAAAACGTCAAGACCAAGATCCAAGACAAAGAAGGTATCCCACCCGATCAA 2019 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | ||||| || || || ||||| || || ||| || ||| |||| ||||||||| Sbjct 2018 CAAAGACTTATTTTCGCTGGTAAACAATTGGAAGATGGTCGTACCCTCTCTGATTACAAC 1959 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 || ||||||||||| || | |||||||| Sbjct 1958 ATCCAAAAAGAATCTACTCTCCATTTAGT 1930 Score = 143 bits (158), Expect = 2e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| || || || ||||||||||| |||| | ||||| ||| | Sbjct 2594 ATGCAAATTTTTGTCAAGACCTTGACCGGTAAAACTATCACCTTGGAAGTTGAAGGTTCT 2535 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || |||| || || |||||||| || ||||| |||||||||||| Sbjct 2534 GACACCATTGAAAATGTCAAGACCAAGATCCAAGACAAAGAAGGTATCCCACCCGATCAA 2475 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | ||||| || || || ||||| || || ||| || || | ||||| |||||| Sbjct 2474 CAAAGACTTATTTTCGCTGGTAAACAATTGGAAGATGGTCGTACTTTATCCGACTACAAC 2415 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 |||||||| ||||| ||| | ||||| || Sbjct 2414 ATTCAAAAGGAATCAACCCTCCATTTGGT 2386 Score = 134 bits (148), Expect = 1e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || || || ||||||||||| |||| | ||||| ||| | Sbjct 2366 ATGCAAATCTTTGTAAAGACCTTGACCGGTAAAACAATCACCTTGGAAGTCGAAGGTTCT 2307 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | |||| || || |||||||| || ||||| |||||||| ||| Sbjct 2306 GACACCATCGAAAACGTCAAGACCAAGATCCAAGACAAAGAAGGTATCCCACCCGACCAA 2247 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | ||||| |||||||| ||||| || || ||| || || | ||||| |||||| Sbjct 2246 CAAAGACTTATCTTTGCCGGTAAACAATTGGAAGATGGTCGTACTTTATCCGACTACAAC 2187 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 || ||||| ||||| ||| | ||||| || Sbjct 2186 ATCCAAAAGGAATCAACCCTCCATTTGGT 2158 >seq322 Length=112280 Score = 154 bits (170), Expect = 1e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || || || ||||||||||| | || | ||||| ||| | Sbjct 11005 ATGCAAATCTTTGTAAAGACCTTGACCGGTAAAACTATTACCTTAGAAGTTGAAGGTTCT 11064 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || |||| ||||| |||||||| || ||||| |||||||| ||| Sbjct 11065 GATACCATTGAAAATGTCAAGACCAAAATCCAAGACAAAGAAGGTATCCCACCCGACCAA 11124 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | ||||| ||||| || ||||| ||||| ||| || || |||| || |||||| Sbjct 11125 CAAAGACTTATTTTTGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGACTACAAC 11184 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || ||||||||||| ||| | |||||||| | || || | |||||| Sbjct 11185 ATCCAAAAAGAATCTACCCTTCATTTAGTACTCCGTTTAAGAGGAGGT 11232 Score = 147 bits (162), Expect = 2e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| || || || ||||||||||| | || | ||||| ||| | | Sbjct 11917 ATGCAAATTTTTGTCAAGACCTTGACCGGTAAAACTATTACCTTAGAAGTTGAAGGCTCT 11976 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || |||| || || ||||| ||||| ||||| |||||||||||| Sbjct 11977 GACACCATTGAAAATGTCAAGACCAAGATCCAAGATAAGGAAGGTATCCCACCCGATCAA 12036 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | ||||| ||||| || || || || || ||| || ||| |||| || |||||| Sbjct 12037 CAAAGACTTATTTTTGCTGGTAAGCAATTGGAAGATGGTCGTACCCTCTCTGACTACAAC 12096 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 || ||||||||||| || | |||||||| Sbjct 12097 ATCCAAAAAGAATCAACTCTCCATTTAGT 12125 Score = 143 bits (158), Expect = 2e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| || || || ||||||||||| | || | ||||| ||| | Sbjct 11233 ATGCAAATTTTTGTCAAGACCTTGACCGGTAAAACTATTACCTTAGAAGTTGAAGGTTCT 11292 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | | ||| ||||| |||||||| || ||||| |||||||||||| Sbjct 11293 GACACCATCGAAAACGTTAAAACCAAAATCCAAGACAAAGAAGGTATCCCACCCGATCAA 11352 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | ||||| ||||| || ||||| || || ||| || || | ||||| |||||| Sbjct 11353 CAAAGACTTATTTTTGCTGGTAAACAATTGGAAGATGGTCGTACTTTATCCGACTACAAC 11412 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 || ||||||||||| || | |||||||| Sbjct 11413 ATCCAAAAAGAATCAACTCTCCATTTAGT 11441 Score = 143 bits (158), Expect = 2e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || || || ||||||||||| |||| | ||||| ||| | Sbjct 11689 ATGCAAATCTTTGTAAAGACCTTGACCGGTAAAACAATCACCTTGGAAGTAGAAGGTTCT 11748 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || | |||| ||||| |||||||| || ||||| |||||||||||| Sbjct 11749 GATACCATTGAAAACGTCAAGACCAAAATCCAAGACAAAGAAGGTATCCCACCCGATCAA 11808 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | || || ||||| || ||||| ||||| ||| || || |||| || |||||| Sbjct 11809 CAAAGACTCATTTTTGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGACTACAAC 11868 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 || ||||||||||| || | ||||| || Sbjct 11869 ATCCAAAAAGAATCAACACTCCATTTGGT 11897 Score = 136 bits (150), Expect = 3e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || || || ||||||||||| | || | ||||| ||| | Sbjct 11461 ATGCAAATCTTTGTAAAGACCTTGACCGGTAAAACTATTACCTTAGAAGTTGAAGGTTCT 11520 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || | || || || |||||||| || ||||| |||||||| ||| Sbjct 11521 GATACCATTGAGAATGTAAAGACCAAGATCCAAGACAAAGAAGGTATCCCACCCGACCAA 11580 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | || || ||||| || ||||| ||||| || || ||| |||| || |||||| Sbjct 11581 CAAAGACTCATTTTTGCTGGTAAACAATTAGAAGACGGTCGTACCCTCTCTGACTACAAC 11640 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTT 22428 || ||||||||||| || | ||||||||| Sbjct 11641 ATCCAAAAAGAATCTACTCTCCATTTAGTT 11670 >seq391 Length=66319 Score = 111 bits (122), Expect = 1e-19 Identities = 145/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 22246 GGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAAAAA 22305 ||||| ||| | ||||| ||||| || | || ||| | || | |||| ||| Sbjct 37409 GGTAAGACGATTACTCTCGAAGTAGAGGGATCAGACACCATCGAAAACGTCAAGGCTAAA 37350 Query 22306 ATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAG 22365 || |||||||| || ||||| || |||||||||||| | ||||| ||||| || ||||| Sbjct 37349 ATCCAAGACAAAGAAGGTATCCCCCCCGATCAACAAAGACTTATCTTTGCTGGTAAACAA 37290 Query 22366 TTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTA 22425 ||||| ||| || || | ||||||||||| ||||| ||||| ||| | |||||| Sbjct 37289 TTAGAAGATGGTCGTACTTTACAAGATTACAACATCCAAAAGGAATCAACCCTCCATTTA 37230 Query 22426 GTTTTGCGATTGCGCGGAGGT 22446 ||| | || | || || ||| Sbjct 37229 GTTCTCAGACTCCGTGGTGGT 37209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419688232608310