Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_008717.1 Length=36415 Score E Sequences producing significant alignments: (Bits) Value seq3974 253 5e-63 seq3067 129 1e-25 >seq3974 Length=4040 Score = 253 bits (280), Expect = 5e-63 Identities = 558/819 (68%), Gaps = 33/819 (4%) Strand=Plus/Minus Query 988 GCTATGTTTATGCCCTAAGTCACGTTAGACACCCCTaaaaaaaaCCACCCTGCCAGGTGG 1047 ||||||||||||||||| || |||||||||| ||| ||||||||||||| | ||||| Sbjct 2945 GCTATGTTTATGCCCTAGGTAACGTTAGACATCCC---AAAAAACCACCCTTGCCGGTGG 2889 Query 1048 TGAG--ATGGAACGTAGGCATGAACAGAACCCGAAATCCCCCGCGACAACAACGTCCCGC 1105 | | ||||| |||||||||||| |||| |||||||| | ||| |||| || Sbjct 2888 TTATGAATGGACGCTAGGCATGAACAAAACC-GAAATCCCGCTTGACC-CAACCCTGCGA 2831 Query 1106 TGGGAGTGGATCAAATACCCAGCTCCGCGCCAGGGGGTCGTCCCTGGCCGAGGTGGCCCG 1165 ||||| ||||||||||||| | || || || | || |||| || || |||| || Sbjct 2830 TGGGAATGGATCAAATACCAA-CTTCGTACCCGAGGTACGTCACTCGCAATCTTGGCGCG 2772 Query 1166 CTCCCTCGACGTATCCAGCC-CGGCAGTCAAAAACGCCAAGCTGAATCCCTACCCCTCGG 1224 || ||||| | ||| | || ||||| ||||| |||| | | || || || Sbjct 2771 TGAACTTGACGT-TACAGATGCTGCCGTCAAGAACGCTAAGCGCACCGCATATCCG-CGA 2714 Query 1225 GTAGAGCGCGCCATCGCTGCTGTACTCGACCTCAGCCCCCTAGTGCTGTGGCCTGAGCGC 1284 | ||||| || || || || || | ||||| || | | ||||||| || || Sbjct 2713 ATGGAGCGAGCTATTGCCCGTGCGCTAGGCCTCAAGCCAATCGACTTGTGGCCCGAACGT 2654 Query 1285 TGGCTCGACGACGAGAATCCGAAGCGGCAACGGCCCAATCGCTCGGAGACCTTGCAGG-C 1343 ||| || ||| | | || | || || | ||| | || | |||| | Sbjct 2653 TGGAACGCAAACG-GCACCCCA-----CACCGT---ATTCGGGTGCAGCGC--GCAGAAC 2605 Query 1344 ATATGTCAGACATAT-GCCAAGTGCTGAGGAAAATACCAGATACGCTGACCAAGCGCAGC 1402 | | || || | | |||||| || | | |||| | || || || | Sbjct 2604 ACAACGCA-ACTTCTAGCCAAGAGC------ATAACCCAGCTTA--TGCCCTTCGACACC 2554 Query 1403 GTAAAGCCGACGCGGGGGCTTGAACATGGCCCGCCGCAAAGACGACCGCACCCTGGACAT 1462 ||||| ||| | ||| || | |||||| ||| || || || || || | ||||| Sbjct 2553 GTAAAACCGGCACGGAGGTATAAACATGCGCCGTGTAAAGGATGATCGTACGTTAGACAT 2494 Query 1463 CTTCGATGTTCCGCAGCCAGCCCGCGCTATACCCGGCGAGTGCAACTATGCCGCCCAGGT 1522 |||| ||| || ||||||| | ||||| || || | ||||| ||||||| ||||| Sbjct 2493 CTTCTCTGTCCCACAGCCAGTTCTGGCTATCCCAGGGAATGGCAACAATGCCGCACAGGT 2434 Query 1523 CAGCGAGCTGGTCAGCGAAATTCTGAAGGCCGCCAACCTCGACCGTTACGAGGTCGCCGC 1582 ||| || ||| ||||||| |||||||| | || | || ||||||||||| | | || Sbjct 2433 CAGTGAACTGATCAGCGAGATTCTGAAAGGTTCCGATCTGGACCGTTACGAAATTGGTGC 2374 Query 1583 CCGCATGTCGCGCCTATCTGGCGATGACGTGAGCAAGAACATGCTCGACGCCTGGTCGAG 1642 |||||||| ||| | ||||||||||||||||| ||| ||||||| ||||| |||||||| Sbjct 2373 ACGCATGTCTCGCTTGTCTGGCGATGACGTGAGTAAGCACATGCTTGACGCGTGGTCGAG 2314 Query 1643 TCCCGCCCGAGCTGATCACAACTTGCCTTTCTACCGCGCCGCCCTCCTGGAGGACGTCTG 1702 || |||||| | || || ||| |||| ||||| | ||| | || || || || || || Sbjct 2313 CCCAGCCCGAACAGACCATAACCTGCCGTTCTATAGAGCCCCACTGCTTGAAGAAGTTTG 2254 Query 1703 CGCGAGCCACCTGCTGACCAACTGGCTGGTCGATGTGCGGGGCGGCCGCGTGGCCTATGG 1762 || ||| | | ||| |||||||||| || || || ||||||||||| || || Sbjct 2253 TAGCAGTCACGTTTTAACCGACTGGCTGGTTGAGCAACGTGGTGGCCGCGTGGCTTACGG 2194 Query 1763 CCGAGACGCACTGCTCGCCGAGCTGGGCCGCCTGGAGCG 1801 || || ||||| ||| ||||| || || |||| ||| Sbjct 2193 TCGCGATGCACTCAACGCGGAGCTTGGTCGTCTGGCGCG 2155 Score = 89.7 bits (98), Expect = 1e-13 Identities = 277/418 (66%), Gaps = 8/418 (2%) Strand=Plus/Minus Query 177 ATCCATCGCCCAAGCCAGACAACGCGCCCAATGATATCCAAGTCAGAAAGCTGGTCCTTG 236 ||||| | ||| ||| || ||||| ||||| || |||| ||| | || ||| || Sbjct 3763 ATCCAACCGCCAGCCCATACTACGCGGCCAATTATCTCCAGGTCGTTCAACTTATCCCTG 3704 Query 237 GGGACGACCATGTCCTTATACGCCTTGTTTTCGCTGATGATCGCGATAGAGCCATCGAAC 296 ||||| ||||| || || |||||||| || |||||||| ||||| || |||||| Sbjct 3703 GGGACAACCATATCGCGGTAGGCCTTGTTCTCACTGATGATGTGAATAGACCCGTCGAAC 3644 Query 297 TGCCGTTGTAAGCGCTTGGCGTAGAGCTGATCCCCGACCCGAATCACATAGATCGCTTCA 356 ||||| || | | || || ||||| || || | | ||| || || || | || || Sbjct 3643 TGCCGCTGGAGCCTTTTCGCATAGAGATGGTCATCCAGCCGGATGACGTATACAGCCTC- 3585 Query 357 TCCCGCACG-GTTCTAAGGTCATGGTCGATAACAACGGCGTCGCCATCCGACAGGAGGGG 415 |||| || | | || || ||||| || | || | |||||||| || || Sbjct 3584 TCCCTCAAGCGAGCTGCGGCTGTGGTCAATCATCACAGTATCGCCATCGCTTAGAAGTCC 3525 Query 416 TTCCATGGAGTCGCCCCCGACCCTTACTGCCGACATCCTGGTTGGCTCTAACCCCTTCTT 475 ||||| || || || | || | | ||| |||| | | | || | || | ||| Sbjct 3524 CTCCATCGAATCCCCGTCCACTCGGATTGCGGACAGTCGCGCAGAGTCCAGGCCTTGCTT 3465 Query 476 GCTCAAGC-TGTA-GCGCGTAAAGGCAAGCTGCGTAAGAACGTGTGCGCCTTCGCTCCAG 533 || |||| ||| ||| || || |||||||| || || || || |||||||||||| Sbjct 3464 GC-GAAGCGAGTACGCG-GTGAACGCAAGCTGGGTTAGGACAGTAGCCCCTTCGCTCCAG 3407 Query 534 CTTCCATGTCCCGCGCTGACCCT-CGCGTCATACAGGGGGACGTAGACATATTGGTCC 590 || |||||||| || || | ||||| |||| || ||||| | || | |||| Sbjct 3406 GCGCCGTGTCCCGCACT-ACAGTGGGCGTCGTACAAAGGCACGTAAGCGTACTTGTCC 3350 >seq3067 Length=6736 Score = 129 bits (142), Expect = 1e-25 Identities = 136/175 (78%), Gaps = 7/175 (4%) Strand=Plus/Minus Query 8925 ACGGCCAAGAACCGCA--CCGTCCACTGAGCGAAACCGCCCCGGCCTGGCCGGGACGGTC 8982 ||||||| |||| | || | || | ||||||| ||||||||| | | ||| ||||| Sbjct 2353 ACGGCCAGGAACAACTTGCCCTGCATTAAGCGAAATCGCCCCGGCGCG-CTGGGGCGGTC 2295 Query 8983 TGCCGGACGTGGTGGTCCGGTACTGATGAGCAGCCACCCATGACGAACGAA--ACCAAGA 9040 ||||||||||||| |||||||||||||||||||||||||||||| ||||| ||| | | Sbjct 2294 TGCCGGACGTGGTTGTCCGGTACTGATGAGCAGCCACCCATGACAGACGAAACACCCAAA 2235 Query 9041 CAGACCGCCAGCGCCGCCTGGCGCGGGAACGCCAACGAGCGAAGCGCGAGCGCGA 9095 ||| ||| | ||||||||| | || || |||| || ||||| ||||||| Sbjct 2234 CAG--CGCAAAACCCGCCTGGCATGCGAGCGTAAACGTGCCCAGCGCAAGCGCGA 2182 Score = 118 bits (130), Expect = 2e-22 Identities = 219/321 (68%), Gaps = 9/321 (3%) Strand=Plus/Minus Query 9342 AAAATCCACATCGCCAAGGCCCAGCTGGGCATGGACGATGACACCTATCGCGCATTGCTC 9401 || ||||||||||||||| | || || |||| || || ||||| || || ||| | Sbjct 1953 AAGATCCACATCGCCAAGAAGGACCTTGGGCTGGATGACGAAACCTACCGGGCCTTGTTG 1894 Query 9402 GCTCGCGTCGCGGGCGTGCGCTCGGCCAAGGACTTAGGGCCGCGCCAGATTGACCAGGTA 9461 | ||||| ||||| ||||| |||||||| ||| | ||| |||||||| | | ||| Sbjct 1893 GGCCGCGTGGCGGGTGTGCGTTCGGCCAAAGACCTGACGCCACGCCAGATCGGCGCTGTA 1834 Query 9462 CTGGTCGAACTCCAGCGTCTGGGCTGG------AAACCGAAGAGCAACCGGCAAGGCCGG 9515 |||| ||| | || |||||||| ||||||| | || ||||||||| Sbjct 1833 CTGGCCGAGTTTGCCCGCTTGGGCTGGGAGTCTAAACCGACTAAAAA---GCAAGGCCGC 1777 Query 9516 GCGACGCCAAAAGTGCCGCAAAACCGGCAAACCGTGCTGCGCAAAATCACCGCGCTCCTG 9575 | || | | | ||| | ||||| || || || | ||||| || | || Sbjct 1776 AAGGGACCGATGGCGGCGCCAGACCGGGTAAAGCTGGTGGGTAAAATAGAGGCTTTTCTC 1717 Query 9576 GCCAGCGCCCATCGCCCCTGGAGCTACGCCGACCATATGGCCCGGCGCATGTTCCAGGTC 9635 ||| ||| | ||| ||||| || |||||| |||||||| |||||||||| ||||| Sbjct 1716 GCCGAGGCCAAACGCTCCTGGGCATATGCCGACGGTATGGCCCTGCGCATGTTCAAGGTC 1657 Query 9636 GAGCGGGTCGAGTGGCTGGAC 9656 ||||| || || ||||| ||| Sbjct 1656 GAGCGAGTGGAATGGCTAGAC 1636 Score = 87.8 bits (96), Expect = 4e-13 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 6397 GCCTGGGGCGAGCGTCCGCCCGTCTTCGTCCAACTGCTGGCCGCCGAGGTGGCCCGCAGC 6456 || |||||| || |||| | ||||| | ||||| |||||||| || || || | Sbjct 5466 GCTTGGGGCCAGGACGCGCCGTTGTTCGTACGCCTGCTCGCCGCCGAAGTCGCTGCCACC 5407 Query 6457 AGCCAGACGAAAGCCGGCGAGGCAATCGGCATGAGCCGTTCGACCGTCAGCACCATCCTC 6516 | | |||| || ||| || || |||||||||||||| || |||||||| | ||| Sbjct 5406 AACAAGACCAAGGCCAGCCAGCGTATCGGCATGAGCCGCACGGCCGTCAGCCTGACCCTT 5347 Query 6517 GCCAACCGCTACCCGTCGCCCTCGACGATCCGCGTCGAGCGCCGCGTCCTGGCCGCGCTG 6576 |||||||||| |||||||| | | | || ||||| || || ||| | ||| Sbjct 5346 TCCAACCGCTATGCGTCGCCCAGCATGGCGGGTGTTGAGCGGCGGGTAATGGAAACCCTG 5287 Query 6577 AGCCGTATTGAGTGCCCGGCCTTGGGCGAGGCGGTGACCTCGGTCGAGTGC 6627 | || ||||| || ||| ||| |||| | || ||| ||| | ||||| Sbjct 5286 GGGCGCATTGAATGTGTCGCCCTGGACGAGACCGTTACCACGGACCAGTGC 5236 Score = 87.8 bits (96), Expect = 4e-13 Identities = 265/400 (66%), Gaps = 16/400 (4%) Strand=Plus/Minus Query 4391 ATCCTGGGTGAAATGGGCATCAAGCCGGCTGGCACGATCCCGGAAATGGCCGACCAGATC 4450 ||||| | || ||| ||||| | ||||| || || ||| |||| |||||||||| Sbjct 6602 ATCCTTCGCGAGATGAGCATCCAACCGGCCCCGACCATGTCGGTGATGGTCGACCAGATC 6543 Query 4451 GCCGAGGAACTGGCCGCCAGCGGCCGCCCGCTGATCATCGACGAAATGGACCACCTGGTC 4510 || ||| | || || ||||| ||||||||| | |||||||| || | ||||| || Sbjct 6542 GCTGAGCAGTTGTCCAAGAGCGGGCGCCCGCTGTTGATCGACGACGTGCAATACCTGCTC 6483 Query 4511 ------GCCGCTGGCCAGGTCGAGCTGATTCGTGATCTGTACGAGTCCAGCCAAGCCTCC 4564 |||| | |||| || |||| || ||| ||| | ||||| ||| || Sbjct 6482 GAAAAAGCCG-TAGCCA--ACGTCCTGA-CCGACATC--TACAACGCCAGCGAAGGGACC 6429 Query 4565 ATCTTGCTGATCGGCGAGGAAATGCTGCCGACCAAGCTGAAGAAGTTCGAACGCTTCCAT 4624 || | ||||||||||| ||| |||| | ||| |||| | |||||| | ||| Sbjct 6428 ATTGTCCTGATCGGCGAAGAACGTGTGCCCGGTAGCCTGGCGAAGCTGGAACGCCTGCAT 6369 Query 4625 GGCCGCGTGCTGAGCTGGGTTCCGGCCCAGCCAGTCTCCCTGGAGGACGCCCGCAACCTG 4684 ||| |||||| ||||| || || |||| | | ||||||| || ||| |||| Sbjct 6368 AACCGGGTGCTGGAGTGGGTACCTGCGCAGCGCGCCACCCTGGACGATCTGCGCGCCCTG 6309 Query 4685 GCGCCGGTCTACAGCCCCGGAGTGGC-TATCGCTGACGACCTGCTCGCGCACTTGGTGAA 4743 || | ||| | |||||| | || ||||||| || |||| | || || || Sbjct 6308 GC-CGAGTCAAGCTACCCGGAATTGCACTTCGCTGATGATTTGCTGGATGACCTGCGCAA 6250 Query 4744 GAA-GTCACTGGGCTCTGTCCGTCGCGTCGCGGTGAACCT 4782 ||| || | | |||| | ||||| || ||||| ||||| Sbjct 6249 GAAGGTGAAT-GGCTGCCTGCGTCGTGTAGCGGTCAACCT 6211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 116395653797676