Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq982 145 6e-30 seq322 140 3e-28 seq540 109 5e-19 seq391 109 5e-19 >seq982 Length=41121 Score = 145 bits (160), Expect = 6e-30 Identities = 177/240 (74%), Gaps = 1/240 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || | ||||| | |||||||| | || ||||||||||| |||||||| ||| Sbjct 2593 ATACCACCTCTAAGTCTGAGGACTAAATGGAGAGTTGATTCTTTTTGGATGTTGTAGTCG 2652 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||||||| |||||| | ||||||||| ||| | || || | ||||| || || Sbjct 2653 GATAAAGTACGACCATCTTCTAATTGTTTACCGGCGAAAATAAGTCTTTGTTGATCAGGT 2712 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || ||||||||||| |||||| || | | ||||| |||||| | ||| Sbjct 2713 GGGATACCTTCTTTGTCTTGAATCTTGGTCTTGACATTTTCAATGGTGTCAGAACCTTCA 2772 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCTTAATTA 114392 || |||| ||| | ||||| ||||||| || ||||||||||| ||||| | ||||||| Sbjct 2773 ACTTCCAAGGTGATTGTTTTACCGGTCAAGGTCTTTACAAAAATTTGCAT-GTTTAATTA 2831 Score = 140 bits (154), Expect = 3e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| ||||| | || ||||| | || ||||| |||||||||||||| ||| Sbjct 2365 ATACCACCACGGAGTCTAAGTACCAAATGGAGGGTTGATTCCTTTTGAATGTTGTAGTCG 2424 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||||||| |||||| | ||||||||||||| | || || | ||||| || || Sbjct 2425 GATAAAGTACGACCATCTTCCAATTGTTTACCAGCGAAAATAAGTCTTTGTTGATCGGGT 2484 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || ||||||||||| ||||| || | | ||||| |||||| | ||| Sbjct 2485 GGGATACCTTCTTTGTCTTGGATCTTGGTCTTGACATTTTCAATGGTGTCAGAACCTTCA 2544 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | ||||| ||||||| || || |||||||| ||||| Sbjct 2545 ACTTCCAAGGTGATAGTTTTACCGGTCAAGGTCTTGACAAAAATTTGCAT 2594 Score = 127 bits (140), Expect = 2e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 114165 AGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGA 114224 ||||| | |||||||| | |||||||||||||| ||||||||||| | |||||| Sbjct 1921 AGTCTGAGGACTAAATGGAGAGTAGATTCTTTTTGGATGTTGTAATCAGAGAGGGTACGA 1980 Query 114225 GAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCT 114284 |||||| | ||||||||||||| | || || | ||||| || || || || |||||| Sbjct 1981 CCATCTTCCAATTGTTTACCAGCGAAAATAAGTCTTTGTTGATCGGGTGGGATACCTTCT 2040 Query 114285 TTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTC 114344 ||||| ||||| || | | ||||| |||||| | ||| || || | ||| Sbjct 2041 TTGTCTTGGATCTTGGTCTTGACGTTTTCAATGGTGTCTGAACCTTCTACCTCTAAGGTG 2100 Query 114345 ACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | ||||| ||||||| || || |||||||| ||||| Sbjct 2101 ATAGTTTTACCGGTCAAGGTCTTGACAAAAATTTGCAT 2138 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || | || ||| | || ||||| | || ||||| ||||| |||||||| ||| Sbjct 2137 ATACCACCTCTTAATCTAAGTACCAAATGGAGGGTTGATTCCTTTTGGATGTTGTAGTCG 2196 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||||||| |||||| | ||||||||| || |||| || | |||||||| || Sbjct 2197 GATAAAGTACGACCATCTTCCAATTGTTTACCGGCAAAGATAAGTCTTTGTTGGTCGGGT 2256 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || ||||||||||| ||||| || | | ||| | |||||| | |||| Sbjct 2257 GGGATACCTTCTTTGTCTTGGATCTTGGTCTTGACGTTTTCGATGGTGTCAGAACCTTCG 2316 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | ||||| ||||||| || |||||||| || ||||| Sbjct 2317 ACTTCCAAGGTGATTGTTTTACCGGTCAAGGTCTTTACAAAGATTTGCAT 2366 >seq322 Length=112280 Score = 140 bits (154), Expect = 3e-28 Identities = 171/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| ||||| | |||||||| | || ||||||||||| |||||||| ||| Sbjct 11462 ATACCACCACGGAGTCTGAGGACTAAATGGAGAGTTGATTCTTTTTGGATGTTGTAGTCG 11403 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||||||| |||||| | |||||||||||| | || || | ||||| || || Sbjct 11402 GATAAAGTACGACCATCTTCCAATTGTTTACCAGCAAAAATAAGTCTTTGTTGATCGGGT 11343 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGC-TGTTCAACGGTGTCGGTGGATTC 114331 || || ||||||||||| || ||| |||||| | | ||| | |||||| | ||| Sbjct 11342 GGGATACCTTCTTTGTCTTGGAT-TTTGGTTTTAACGTTTTCGATGGTGTCAGAACCTTC 11284 Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | ||||| ||||||| || || |||||||| ||||| Sbjct 11283 AACTTCTAAGGTAATAGTTTTACCGGTCAAGGTCTTGACAAAAATTTGCAT 11233 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || | ||||| | ||||||||| | |||||||||||||| |||||||| || Sbjct 11690 ATACCACCTCTAAGTCTGAGAACTAAATGGAGAGTAGATTCTTTTTGGATGTTGTAGTCA 11631 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | |||||| ||||| | |||||||||||| | ||||| | |||||||| || Sbjct 11630 GAGAGGGTACGACCGTCTTCTAATTGTTTACCAGCAAAAATGAGTCTTTGTTGGTCGGGT 11571 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || ||||||||||| ||||| |||| | |||| ||| || | ||| Sbjct 11570 GGGATACCTTCTTTGTCTTGGATCTTGGTCTTTACATTCTCAATGGTATCAGAACCTTCA 11511 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | ||||| ||||||| || |||||||| || ||||| Sbjct 11510 ACTTCTAAGGTAATAGTTTTACCGGTCAAGGTCTTTACAAAGATTTGCAT 11461 Score = 122 bits (134), Expect = 7e-23 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || | || ||| | || ||||| | || ||||||||||| |||||||| || Sbjct 11918 ATACCACCTCTTAATCTAAGTACCAAATGGAGTGTTGATTCTTTTTGGATGTTGTAGTCA 11859 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||||||| |||||| | |||||||||||| | ||||| | ||||| || || Sbjct 11858 GAGAGAGTACGACCATCTTCTAATTGTTTACCAGCAAAAATGAGTCTTTGTTGATCGGGT 11799 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGT-TTTAGCTGTTCAACGGTGTCGGTGGATTC 114331 || || ||||||||||| || ||| || || | | ||||| ||| || | ||| Sbjct 11798 GGGATACCTTCTTTGTCTTGGAT-TTTGGTCTTGACGTTTTCAATGGTATCAGAACCTTC 11740 Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | ||||| ||||||| || |||||||| || ||||| Sbjct 11739 TACTTCCAAGGTGATTGTTTTACCGGTCAAGGTCTTTACAAAGATTTGCAT 11689 Score = 120 bits (132), Expect = 3e-22 Identities = 154/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 114174 ACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCA 114233 |||||||| | |||||||||||||| |||||||| || | ||||||| |||||| Sbjct 11213 ACTAAATGAAGGGTAGATTCTTTTTGGATGTTGTAGTCAGAGAGAGTACGACCATCTTCT 11154 Query 114234 AGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCA 114293 | |||||||||||| | || || | |||||||| || || || ||||||||||| Sbjct 11153 AATTGTTTACCAGCAAAAATAAGTCTTTGTTGGTCGGGTGGGATACCTTCTTTGTCTTGG 11094 Query 114294 ATCTTTTGT-TTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTT 114352 || ||| || || | | ||||| ||| || | ||| || || | ||| | ||||| Sbjct 11093 AT-TTTGGTCTTGACATTTTCAATGGTATCAGAACCTTCAACTTCTAAGGTAATAGTTTT 11035 Query 114353 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||||||| || |||||||| || ||||| Sbjct 11034 ACCGGTCAAGGTCTTTACAAAGATTTGCAT 11005 Score = 105 bits (116), Expect = 6e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 114165 AGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGA 114224 ||||| | |||||||| | || ||||||||||| |||||||| || | |||||| Sbjct 12134 AGTCTGAGGACTAAATGGAGAGTTGATTCTTTTTGGATGTTGTAGTCAGAGAGGGTACGA 12075 Query 114225 GAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCT 114284 |||||| | ||| |||||||| | || || | ||||| || || || || ||||| Sbjct 12074 CCATCTTCCAATTGCTTACCAGCAAAAATAAGTCTTTGTTGATCGGGTGGGATACCTTCC 12015 Query 114285 TTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTC 114344 || || ||||| || | | ||||| |||||| | | ||| || || | ||| Sbjct 12014 TTATCTTGGATCTTGGTCTTGACATTTTCAATGGTGTCAGAGCCTTCAACTTCTAAGGTA 11955 Query 114345 ACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | ||||| ||||||| || || |||||||| ||||| Sbjct 11954 ATAGTTTTACCGGTCAAGGTCTTGACAAAAATTTGCAT 11917 >seq540 Length=89862 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || | ||||| | |||||||| | || ||||||||||| ||||| ||||| Sbjct 84088 ATACCACCTCTAAGTCTGAGGACTAAATGAAGGGTTGATTCTTTTTGGATGTTATAATCA 84029 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | |||||| |||||| | ||||||||| || | || || | ||||| || || Sbjct 84028 GAGAGGGTACGACCATCTTCCAATTGTTTACCGGCAAAAATAAGTCTTTGTTGATCGGGT 83969 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || |||||||| || ||||| || | | ||||| |||||| | | || Sbjct 83968 GGGATACCTTCTTTATCTTGGATCTTGGTCTTGACGTTTTCAATGGTGTCAGAGCCCTCA 83909 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | ||||| ||||||| ||||| |||||||| ||||| Sbjct 83908 ACTTCTAATGTGATTGTTTTACCGGTCAAGGTTTTAACAAAAATTTGCAT 83859 Score = 107 bits (118), Expect = 2e-18 Identities = 164/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || | || ||| | || ||||| | || ||||| ||||| ||||| ||||| Sbjct 83860 ATACCACCTCTTAATCTAAGTACCAAATGGAGGGTTGATTCCTTTTGGATGTTATAATCA 83801 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | |||||| |||||| | ||||||||| || |||| || | |||||||| || Sbjct 83800 GAGAGGGTACGACCATCTTCCAATTGTTTACCGGCAAAGATTAGTCTTTGTTGGTCGGGT 83741 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGC-TGTTCAACGGTGTCGGTGGATTC 114331 || || |||||||| || || ||| || || | | ||||| |||||| | ||| Sbjct 83740 GGGATACCTTCTTTATCTTGGAT-TTTGGTCTTGACATTTTCAATGGTGTCAGAACCTTC 83682 Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | ||||| ||||| | ||| ||||||||||| ||||| Sbjct 83681 AACTTCTAATGTGATAGTTTTTCCGGTTAAAGTCTTTACAAAAATTTGCAT 83631 Score = 107 bits (118), Expect = 2e-18 Identities = 165/233 (71%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 114151 AAATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAAT 114210 || |||| || | || ||| | ||| | ||| | || ||||||||||| |||||||||| Sbjct 84546 AATTACCACCTCTTAATCTAAGAACGAGATGGAGGGTTGATTCTTTTTGGATGTTGTAAT 84487 Query 114211 CGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCG 114270 | | |||||| |||||| | ||||||||| || | || || | ||||| || | Sbjct 84486 CAGAGAGGGTACGACCATCTTCCAATTGTTTACCGGCAAAAATAAGTCTTTGTTGATCGG 84427 Query 114271 GAGGAATGCCTTCTTTGTCGGCAATCTTTTGT-TTTAGCTGTTCAACGGTGTCGGTGGAT 114329 | || || |||||||| || || ||| || || | | ||||| |||||| | | Sbjct 84426 GTGGGATACCTTCTTTATCTTGGAT-TTTGGTCTTGACATTTTCAATGGTGTCAGAACCT 84368 Query 114330 TCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || || | || | ||||| ||||||| ||||| |||||||| ||||| Sbjct 84367 TCAACTTCTAATGTGATGGTTTTACCGGTCAAGGTTTTAACAAAAATTTGCAT 84315 >seq391 Length=66319 Score = 109 bits (120), Expect = 5e-19 Identities = 105/135 (78%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| ||||| | ||||||||| | || ||||| ||||| ||||||||||| Sbjct 37209 ACCACCACGGAGTCTGAGAACTAAATGGAGGGTTGATTCCTTTTGGATGTTGTAATCTTG 37268 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 | ||||||| |||||| | |||||||||||| |||| || | ||||| || || || Sbjct 37269 TAAAGTACGACCATCTTCTAATTGTTTACCAGCAAAGATAAGTCTTTGTTGATCGGGGGG 37328 Query 114275 AATGCCTTCTTTGTC 114289 || ||||||||||| Sbjct 37329 GATACCTTCTTTGTC 37343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420094594103688