Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_009016.1 Length=38197 Score E Sequences producing significant alignments: (Bits) Value seq4174 241 3e-59 seq2004 84.2 5e-12 >seq4174 Length=799 Score = 241 bits (266), Expect = 3e-59 Identities = 388/553 (70%), Gaps = 6/553 (1%) Strand=Plus/Plus Query 14785 CGCCGTCCACCATCGCCATGGGCGCAGTGGCCGCGGTGAAGCCGTGGGAGTCTCCAGGCA 14844 ||||||| || | ||||| | ||| ||||| ||| |||| ||||| || |||| Sbjct 196 CGCCGTCGTCCCTGGCCATCGCCGCGCTGGCCAAGGTCAAGCAATGGGAAAGCCCGGGCA 255 Query 14845 ACCAAGGCGTGCTGATTC-AGGATGTGGCTCGAGTCATCGACTACAACATCCTGGACAAG 14903 | || || | || | | || ||| | || || | || ||||||||||| |||| Sbjct 256 ATCA-GGTGACCTTCGCCGAAGACGTGTCCCGCGTGGTTGAGTACAACATCCTCGACACC 314 Query 14904 AGCACCGAGGGTGACCTGCTCAACCGTAACGGCGTGAGCTACTTTGCTCGCACTAGCATG 14963 |||||| || |||||||||||||| ||||||||||||||| || ||||| | | | Sbjct 315 TCCACCGAAGGCGACCTGCTCAACCGCTACGGCGTGAGCTACTACGCCCGCACCATCCTC 374 Query 14964 GGCGGCTTTAGTCTTATCGGCAACCGCACGGTGACGGGCAAGTTTATCTCGTTTGTCGGC 15023 ||||| || || | || |||||| | | || |||||||| ||| | || ||| Sbjct 375 GGCGGTTTCTCGCTGCTGGGTAACCGCTCCATCACCGGCAAGTTCATCAGCTACGTGGGC 434 Query 15024 CTCGAGGACGCCATCGCTCGCAAGCTGG--AAGCAGCCAGCCAGCGTGCTATGTCCAAGC 15081 || || || || ||| |||||||||| ||| ||| ||||| || ||| ||||| Sbjct 435 CTGGAAGATGCGATCAGCCGCAAGCTGGTCAAG--GCCGGCCAGAAAGCCATGGCCAAGA 492 Query 15082 AGCTGACCAAGAGCTTCATGGAGCAGGAAATCAAGAAGATTAACCTGTTCATGCAAGACC 15141 | ||||||||| |||||||| ||||| ||||| || ||| | ||||| || Sbjct 493 ACCTGACCAAGTCGTTCATGGACCAGGAGGTCAAGCGCATCAACGACTGGCTGCAAACCC 552 Query 15142 TTGTCGCGGCTGAAATTATCCCAGGCGGTGAAGTGTACCTGCACCCGACTCTTAACACGG 15201 | || || | || | || || ||||| ||||||||||||||| | |||| | Sbjct 553 TGGTGGCCGACGAGACCATTCCCGGCGGCAGCGTGTACCTGCACCCGGAATTGAACAGTG 612 Query 15202 TCGAGCGGTATAAGAACGGCTCCTGGTACATCGTGATCGATTACGGCCGTTACAGCCCGA 15261 ||||| ||| ||||||||| |||||| |||||| ||||| |||||||| ||| |||| Sbjct 613 TCGAGAAGTACAAGAACGGCACCTGGTTCATCGTCATCGACTACGGCCGCTACGCGCCGA 672 Query 15262 ACGAGCACATGATTTTCCACCTGAATGCGGTAGACCGCATCGTCGAAGAGTTCATTGAGG 15321 |||| |||||||||| || || || || || ||| |||| ||||| | |||| Sbjct 673 ACGAACACATGATTTATCAACTCAACGCCCGCGATGAAATCATCGAGCAGTTCCTGGAGG 732 Query 15322 AGGTGCTGTAATG 15334 | || || ||||| Sbjct 733 ACGTTCTCTAATG 745 >seq2004 Length=2852 Score = 84.2 bits (92), Expect = 5e-12 Identities = 170/250 (68%), Gaps = 2/250 (1%) Strand=Plus/Plus Query 11300 TGAGTATGAGGTTCGGGAGATCGGCTTTTACCTCGAGTCCGGCACCTTGCTGGCCGTGTA 11359 |||||||||| || | ||| | || |||||||| | ||| ||||||||||| || || Sbjct 728 TGAGTATGAGATTGGAGAGTTTGGGTTTTACCTGGCTAGCGGGACCTTGCTGGCAGTTTA 787 Query 11360 CTCGGTACCGAACACCCTGCTCACGTATAAGTCGGCCAACAGCAGCTGGATC-CAGAAGT 11418 || || | | |||||||| || || ||||| | || || || ||||||| Sbjct 788 TTCTGTTGCCGGGAAACTGCTCACCTACAAAGCGGCCG-CGGCCCGTGTATTGCAGAAGT 846 Query 11419 TCACTCTGGATATCTCGCCGCTGCCAACTGACAGCGTGACCGTCGTGGTCGGTACGGAAA 11478 |||| ||||| | | || ||||| || || || || || || || |||| ||||| Sbjct 847 TCACGCTGGACCTAACACCACTGCCGGTCGATAGTGTCACGGTAGTAGTGGGTATGGAAA 906 Query 11479 ACATCAATCTGATGATGACCGAGGAACTGGCCACCATGGCCACGGCCCAGATTGACAACA 11538 | | ||| | | || | || ||| ||||| | |||| || ||| | ||||| || | Sbjct 907 ATCTTAATATTTTAATTGCAGAAGAATTGGCCGCTGTGGCTACAGCCAATATTGATAATA 966 Query 11539 TGACCCGGCA 11548 || | || || Sbjct 967 TGGCTCGTCA 976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 122097527373492