Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq3596 105 1e-17 seq54 102 2e-16 >seq3596 Length=2072 Score = 105 bits (116), Expect = 1e-17 Identities = 294/444 (66%), Gaps = 14/444 (3%) Strand=Plus/Minus Query 42420 ATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTC 42479 ||||| || || || || || ||||||||| || ||||| ||||| || | ||| Sbjct 464 ATACTTGCTTTTTTTGCTGCAAGTGACGGCATTGTAAATGAAAACCTTGCAGTGAACTTC 405 Query 42480 ATGAAAGAGGTGCAGTACTTT--GAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAG 42537 |||| || || ||| ||| || || || || || || ||||||||||| || | Sbjct 404 ATGAGCGAAGTACAG--CTTCCCGAAGCCCGTTGTTTTTATGGCTTCCAGATCATGATGG 347 Query 42538 AGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCG 42597 | ||| | |||||||| || || ||| || | || || || ||||| | | Sbjct 346 AAAACATCCACTCTGAAACCTATGCGCTGCTGATCGATACCTATATTAAAGATCCTGAAG 287 Query 42598 AGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACT 42657 | || |||||||| | ||| | |||||| | || || | ||||| || || || | Sbjct 286 AAAAAGACAGGCTGTTCCATGCCGTAGAGACGGTTCCTTGTGTAAAGAAAAAAGCAGAAT 227 Query 42658 GGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTA 42717 |||| | |||||| ||| | || || || | ||| | |||| || || Sbjct 226 GGGCATTGCGCTGGATTGAGGG------CGGAAATTTTGCCGAACGTTTGGTGGCTTTCG 173 Query 42718 CCGCCGTCGAGGGCATCTTCTTCT-CGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG 42776 |||| || || ||||| |||||| |||| || ||| || ||||||||| | || | Sbjct 172 CCGCAGTGGAAGGCATTTTCTTCAGCGGGAGC-TTCTGTTCGATCTTCTGGTTGAAAAAA 114 Query 42777 A-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCT 42835 | ||| | |||||| || || ||||| || || | || ||| || |||||| | Sbjct 113 AGAGGCCT-GATGCCAGGGCTAACCTTTAGTAATGAGTTGATTTCCAGAGATGAGGGGAT 55 Query 42836 GCATAGGGACTTTGCCTGCCTCCT 42859 |||| | || ||||||||||| || Sbjct 54 GCATTGTGAATTTGCCTGCCTGCT 31 >seq54 Length=99412 Score = 102 bits (112), Expect = 2e-16 Identities = 232/348 (67%), Gaps = 12/348 (3%) Strand=Plus/Plus Query 42512 CTTCTACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCT 42571 ||| || ||||||||||| || ||||||| | || || || || | ||| || Sbjct 88285 CTTTTATGGCTTCCAGATTGCTGTAGAGAATATCCATTCAGAAACCTATTC---ACTCCT 88341 Query 42572 CA---ACACGTACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGAC 42628 || | || ||||| |||||| || | || | || ||||| ||||| || || Sbjct 88342 CATTGATACCTACATTAAGGATCCTCAAGAAAGAAATCGCCTTTTCAATGCCATCGACAC 88401 Query 42629 GATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGC 42688 | ||| | ||||| || || || ||||| | ||||| || | | || Sbjct 88402 CCTCGACTGTGTTAAGAAAAAAGCAGAATGGGCTTTACGTTGGATAGA------CCAAGC 88455 Query 42689 AACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGC 42748 | || | || || || | |||||| | || || || ||||| |||||||| || Sbjct 88456 GAGTTTTGCTGAAAGACTCATTGCCTTTGCAGCTGTAGAAGGCATTTTCTTCTCTGGTAG 88515 Query 42749 CTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAA 42808 ||| ||| |||||||||||||| | | || | |||||||| || | |||||| || Sbjct 88516 CTTTTGCTCGATCTTCTGGCTCAAAAAAAGGGGATTAATGCCCGGTCTTAGCTTCTCCAA 88575 Query 42809 CGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCT 42856 ||||||||| |||||||| || ||||| | |||||||| ||||| Sbjct 88576 CGAACTCATTTCTAGGGACGAAGGATTGCATTGTGACTTTGCTTGCCT 88623 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944247433838240