Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_009234.1 Length=35741 Score E Sequences producing significant alignments: (Bits) Value seq1445 210 5e-50 >seq1445 Length=14432 Score = 210 bits (232), Expect = 5e-50 Identities = 698/1064 (66%), Gaps = 44/1064 (4%) Strand=Plus/Minus Query 4117 CTACATCGCGATCGACACCACGGGCATGGGGCAAGGCGTCTACCAGCTCGTGCGCAAGTT 4176 |||||||| |||||| | ||| |||| ||| ||||| ||||| ||| |||| Sbjct 13171 CTACATCGGGATCGATATCACCGGCACGGGTTCCGGCGTGGCGCAGCTGGTGAAGCAGTT 13112 Query 4177 CTTCCCGGCCGCCGTCGCGCTGAACTACTCGCCCGAGGTGAAAACCCGCCTCGTGCTCAA 4236 ||||||| | | | || | | |||||| ||||| || ||||||||||| ||||| || Sbjct 13111 CTTCCCGAACATCACCACGTTCAGCTACTCACCCGAAGTCAAAACCCGCCTGGTGCTGAA 13052 Query 4237 GGGCCAGTCCGTCGTCCGGAACGGCCGCCTGCAATTCGACGCGGGCTGGACCGATCTGGC 4296 || | |||| || |||||| | ||| | ||||| ||||||||||| ||| |||| Sbjct 13051 GGCTTACGACGTCATCAAAAACGGCAGGCTGGAGTTCGATGCGGGCTGGACGGATATGGC 12992 Query 4297 GGCGGCGTTCATGGCGATCAAACAGACGATGACGGCGAGCGGCCGCCAGGCGACCTACAC 4356 | | | || ||||| ||| | || || || || ||| ||| | || ||||| Sbjct 12991 GCAGTCATTGATGGCTATCCGCAAAACAATCACCGCCTCCGGGCGCATGTTCACTTACAC 12932 Query 4357 CGCCGGCCGTACCGAGGAAACCGGCCACGCCGATCTGGCGTGGGC-CTGCCTGCACGCAA 4415 ||||| || || || || || ||||| ||||| || |||||||| ||| | ||||| Sbjct 12931 GGCCGGTCGCACAGACGAGACGGGCCATGCCGACCTAGCGTGGGCGCTGT-TCCACGCGC 12873 Query 4416 TCGACCGCGAGCCGCTCGCCGG-----CGGCGGCATTCATTCTTCTTCTTTCACGGAGTT 4470 | || ||| || || | || | |||| || | ||| | ||||| Sbjct 12872 TGCACAACGAACCCCTTGAAGGGCAGACCACGGCGAACAC----CGGATTT-ATGGAGTC 12818 Query 4471 TTACGCATGAGCA------Agcgccgatcgc-gcgcgccgcgcacgttc-gcggccgcgc 4522 ||| ||||||| ||||| || | | || ||| | || || || || || Sbjct 12817 CTACTGATGAGCAGACGTAAGCGCGGAACCCAGCTGGCCAC---CGCTCAGCCACC-CGT 12762 Query 4523 ccaatccgagcgccggcagcgccgcgccggcgcgtgccgAGGTCTTCACGTTCGACGATC 4582 || || | || || | | | | | || | || | ||||| |||| |||| Sbjct 12761 TGAAGGGGATTTGCTGCCGC-CTGAGTCCGGGCCGGTTGAAGCGTTCACTTTCGGTGATC 12703 Query 4583 CGACGCCCGTCATGAA---CCGGGCCGAGATTCTCGATTACGTCGAGTGCTGGTCGAACG 4639 | | ||||| || | ||||| |||| ||||| ||| | ||||||||| | || | Sbjct 12702 CCGCTCCCGTGTTGGATAGCCGGG---AGATCCTCGACTACCTGGAGTGCTGGGCCAATG 12646 Query 4640 GCGAATGGTTCGAGCCGCCGGTCAGCTTCGCCGGCCTGGCGAAATCGTTTCGCGCGAGCA 4699 || ||||| || | ||| | | | | ||||||||||||| || || || ||| Sbjct 12645 GCCGTTGGTTTGAAACACCGATGTCCATGGACGGCCTGGCGAAAACGACCCGGGCCAGCG 12586 Query 4700 CGCACCATAGCTCGGCGCTGTTCTTCAAGGCGAACGTGCTGGCGTCGACGTTCCGCCCGC 4759 | ||| |||| |||| ||||||| ||| |||| || |||||| || | Sbjct 12585 TGTACCTCCAGTCGG-GCTGAACTTCAAGCGCAACATGCTTGCCCGCACGTTCGTTCCCC 12527 Query 4760 ACCGCTGGCTGTCG---CGGCACGCGTTCGAGCGGTGGGCGCTCGATTTCCTGACGTTCG 4816 |||| ||||| | || || || || |||| || || || || | || || | Sbjct 12526 ACCG---GCTGTTGAGTCGCCAAGCCTTTGAGCAGTTCGCCCTGGACTGGCTCTGGTGTG 12470 Query 4817 GCAACGGCTATCTGGAACGCCGCCGCAACATGGTCGGCGGCACGCTGCGGCTCGAGCCCG 4876 ||||| |||| |||||| ||| ||||||| || || ||| || | || ||| Sbjct 12469 GCAACTGCTACCTGGAAAAGCGCAACAACATGCTCCGCAACACCATGGGCCTGCTGCCTC 12410 Query 4877 CGCTCGCGAAGTACGTCCGGCGCAAGGCCGATTTCAGCGGCTTCGTGT-ACGTGAACGGC 4935 | || ||||||||| | || || | || | | | | | | | ||| ||| Sbjct 12409 CACTGGCGAAGTACATGCGCCGGGGTGTGGACATG-GAGACCTATTACCAGGTGCGTGGC 12351 Query 4936 TGGCAGGAGCGGCACGAGTTCGAGCCCGACAGCGTGTTCCAGCT-CGTGCGGCCGGACAT 4994 ||| |||| || || || | |||| | | ||| | || | ||||| | || Sbjct 12350 TGGAAGGACGAACATGAATTTGCCCCCGGTTCGATCTGCCACTTGCGCGAGGCCG-ATAT 12292 Query 4995 CAATCAGGAGGTCTATGGCCTGCCCGAGTATCTGAGCTCGCTGCACTCGGCCTGGCTGAA 5054 ||| ||||| |||| |||||||| |||| ||| ||||||| || ||| || Sbjct 12291 CAACCAGGAAATCTACGGCCTGCCGGAGTGGCTGGCAGCGCTGCAAAGCGCACTGCTCAA 12232 Query 5055 CGA-ATCGTCGACGCTGTTCCGGCGCAAGTATTACGAGAACGGCAGCCACGCCGGCTTCA 5113 ||| | || | |||||||||||||||||||| ||| | ||||||||||| ||||| |||| Sbjct 12231 CGAGAGCGCC-ACGCTGTTCCGGCGCAAGTACTACAACAACGGCAGCCATGCCGGTTTCA 12173 Query 5114 TCCTGTACATGACCGACGCCGCGCAGAAGCAGGACGACGTGGAC 5157 | ||||||||||||||||| ||||||||| | || ||| | ||| Sbjct 12172 TTCTGTACATGACCGACGCGGCGCAGAAGGAAGAGGACATCGAC 12129 Score = 132 bits (146), Expect = 1e-26 Identities = 202/286 (71%), Gaps = 10/286 (3%) Strand=Plus/Minus Query 5230 GGGAAGAAGGACGGCATCCAGCTCATTCCCGTGTCCGAGGTCGCCGCGAAGGACGAGTTC 5289 || ||||| |||||||| |||||||| || ||| |||||| || || |||||||| ||| Sbjct 12056 GGCAAGAAAGACGGCATTCAGCTCATCCCGGTGAGCGAGGTTGCGGCCAAGGACGAATTC 11997 Query 5290 TTCAACATCAAGAACGTGACGCGCGACGATCTGCTCGCCGCGCACCGCGTGCCGCCGCAG 5349 | ||||| ||| | | || |||||||||||||| ||| ||| | || |||||| Sbjct 11996 AGCTCGATCAAAAACATCAGCCGTGACGATCTGCTCGCGGCGTTGCGCATTCCACCGCAG 11937 Query 5350 TTGCTCGGCATCGTGCCGAGCAATTCGGGCGGGTTCGGCAC---GCCGGATACCGCCGCG 5406 ||| | |||||||||||| || ||||||| || || | || ||| | || | | Sbjct 11936 TTGATGGGCATCGTGCCGCAGAACGCGGGCGGTTTTGGGTCGTTGCGGGAGGCTGCTGAG 11877 Query 5407 CGTGTGTTCGGGCG--CAACGAAATCAGGCCGCTACAGGCGCGCTTCGCCGAGCTGAACG 5464 ||| ||||| |||||| | |||| | |||||| | | ||| || | |||| Sbjct 11876 -----GTTTGGGCGGTCAACGAGCTGGAGCCGTTGCAGGCGAGGCTGGCCCAGGTCAACG 11822 Query 5465 ACTGGCTCGGCGACGAGGTCGTGACGTTCGACGATTACGAGATTCC 5510 | ||||| || || ||||| || | |||| | || | ||| |||| Sbjct 11821 AGTGGCTGGGTGAAGAGGTTGTCAGGTTCAAGGAGTTTGAGCTTCC 11776 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 114239052905364