Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_009235.2 Length=48674 Score E Sequences producing significant alignments: (Bits) Value seq1340 80.6 8e-11 >seq1340 Length=18762 Score = 80.6 bits (88), Expect = 8e-11 Identities = 167/246 (68%), Gaps = 2/246 (1%) Strand=Plus/Minus Query 17910 GTCCCGACAAACTACGACCCGGAGACGCGTACGTACTCGGGTACATGGGACGGTACGTTC 17969 || ||| | ||||| ||||| ||||||| ||| |||| |||||||| ||||| Sbjct 3389 GTGCCGTCGAACTATAACCCGCAGACGCGGCAATACAGCGGTATCTGGGACGGAACGTTT 3330 Query 17970 AAGGCAGCATGGACGAACAATCCGGCGTGG-GTCTACTACGGCCTACTTCTCGACAAGCT 18028 ||| | |||| | ||||| ||||| ||| |||| | | | || | || || Sbjct 3329 AAGCCGGCATACAGCAACAACCCGGCCTGGTGTCTG-TGGGATATGCTGACCCACCCGCG 3271 Query 18029 CAACGGATTGGGTGACCGTGTCGATGCTTCGATGGTCGATAAGTGGGCGCTGTACGCAAT 18088 | |||| |||| | ||| | | ||| || || ||||| ||||||||||| | || Sbjct 3270 CTACGGCATGGGGAAACGTCTTGGTGCGGCGGATGTGGATAAATGGGCGCTGTATGTCAT 3211 Query 18089 CGCGCGTTACTGCGACGAACTCGTGTCCGACGGGAAGGGCGGCAAGGAGCCGCGCTTCAC 18148 || | ||||||||| | ||| | ||||| |||||| |||||||||| |||| Sbjct 3210 CGGCCAGTACTGCGACCAGTCAGTGCCGGACGGTTTTAGCGGCACGGAGCCGCGCATCAC 3151 Query 18149 CTGCAA 18154 ||| || Sbjct 3150 CTGTAA 3145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 155620832341968