Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_009236.1 Length=36690 Score E Sequences producing significant alignments: (Bits) Value seq1445 228 2e-55 >seq1445 Length=14432 Score = 228 bits (252), Expect = 2e-55 Identities = 699/1063 (66%), Gaps = 42/1063 (4%) Strand=Plus/Minus Query 4172 CTACATCGCGATCGACACCACGGGCATGGGGCAAGGCGTCTACCAGCTCGTGCGCAAGTT 4231 |||||||| |||||| | ||| |||| ||| ||||| ||||| ||| |||| Sbjct 13171 CTACATCGGGATCGATATCACCGGCACGGGTTCCGGCGTGGCGCAGCTGGTGAAGCAGTT 13112 Query 4232 CTTCCCGGCCGCCGTCGCGCTGAACTACTCGCCCGAGGTGAAAACCCGCCTCGTGCTCAA 4291 ||||||| | | | || | | |||||| ||||| || ||||||||||| ||||| || Sbjct 13111 CTTCCCGAACATCACCACGTTCAGCTACTCACCCGAAGTCAAAACCCGCCTGGTGCTGAA 13052 Query 4292 GGGCCAGTCCGTCGTCCGGAACGGCCGCCTGCAATTCGACGCGGGCTGGACCGATCTGGC 4351 || | |||| || |||||| | ||| | ||||| ||||||||||| ||| |||| Sbjct 13051 GGCTTACGACGTCATCAAAAACGGCAGGCTGGAGTTCGATGCGGGCTGGACGGATATGGC 12992 Query 4352 GGCGGCGTTCATGGCGATCAAACAGACGATGACGGCGAGCGGCCGTCAGGCGACCTACAC 4411 | | | || ||||| ||| | || || || || ||| || | || ||||| Sbjct 12991 GCAGTCATTGATGGCTATCCGCAAAACAATCACCGCCTCCGGGCGCATGTTCACTTACAC 12932 Query 4412 CGCTGGCCGTACCGACGAGACGGGCCACGCCGACCTGGCGTGGGCGTGCCTGCACGCGAT 4471 || || || || |||||||||||||| |||||||| ||||||||| | |||||| | Sbjct 12931 GGCCGGTCGCACAGACGAGACGGGCCATGCCGACCTAGCGTGGGCGCTGTTCCACGCGCT 12872 Query 4472 CGACCGCGAGCCGCT-----CGCCGGCGGCGGCATTCATTCATCTTCATTCACGGAGTTT 4526 || ||| || || || | | |||| || | ||| | ||||| Sbjct 12871 GCACAACGAACCCCTTGAAGGGCAGACCACGGCGAACA-----CCGGATTTATGGAGTCC 12817 Query 4527 TACGCATGAGC------AAgcgccgatcgc-gcgcgccgcgcacgttc-gcggccgcgcc 4578 ||| |||||| |||||| || | | || ||| | || || || || || Sbjct 12816 TACTGATGAGCAGACGTAAGCGCGGAACCCAGCTGGCCAC---CGCTCAGCCACC-CGTT 12761 Query 4579 caatccgagcgccggcagcgccgcgccggcgcgcgccgAGGTCTTCACGTTCGACGATCC 4638 || || | || || | | | | | || | || | ||||| |||| ||||| Sbjct 12760 GAAGGGGATTTGCTGCCGC-CTGAGTCCGGGCCGGTTGAAGCGTTCACTTTCGGTGATCC 12702 Query 4639 GACGCCCGTCATG---AACCGGGCCGAGATTCTCGATTACGTCGAGTGCTGGTCGAACGG 4695 | ||||| || | |||| ||||| ||||| ||| | ||||||||| | || || Sbjct 12701 CGCTCCCGTGTTGGATAGCCGG---GAGATCCTCGACTACCTGGAGTGCTGGGCCAATGG 12645 Query 4696 CGAATGGTTCGAGCCGCCGGTCAGCTTCGCCGGCCTGGCGAAATCGTTTCGCGCGAGCAC 4755 | ||||| || | ||| | | | | ||||||||||||| || || || ||| Sbjct 12644 CCGTTGGTTTGAAACACCGATGTCCATGGACGGCCTGGCGAAAACGACCCGGGCCAGCGT 12585 Query 4756 GCACCATAGCTCGGCGCTGTTCTTCAAGGCGAACGTGCTGGCGTCGACATTCCGCCCGCA 4815 | ||| |||| |||| ||||||| ||| |||| || || ||| || || Sbjct 12584 GTACCTCCAGTCGG-GCTGAACTTCAAGCGCAACATGCTTGCCCGCACGTTCGTTCCCCA 12526 Query 4816 CCGCTGGCTGTCG---CGGCACGCGTTCGAGCGGTGGGCGCTCGATTTCCTGACGTTCGG 4872 || |||||| | || || || || |||| || || || || | || || || Sbjct 12525 CC---GGCTGTTGAGTCGCCAAGCCTTTGAGCAGTTCGCCCTGGACTGGCTCTGGTGTGG 12469 Query 4873 CAACGGCTATCTGGAACGCCGCCGCAACATGGTCGGCGGCACGCTGCGGCTCGAGCCCGC 4932 |||| |||| |||||| ||| ||||||| || || ||| || | || ||| | Sbjct 12468 CAACTGCTACCTGGAAAAGCGCAACAACATGCTCCGCAACACCATGGGCCTGCTGCCTCC 12409 Query 4933 GCTCGCGAAGTACGTACGGCGCAAGGCGGATTTCAGCGGCTTCGT-GTACGTGAACGGCT 4991 || ||||||||| | || || | ||| | | | | | | | ||| |||| Sbjct 12408 ACTGGCGAAGTACATGCGCCGGGGTGTGGACAT-GGAGACCTATTACCAGGTGCGTGGCT 12350 Query 4992 GGCAGGAGCGGCACGAGTTCGCGCCCGACAGCGTGTTCCAGCTCGTGCG-GCCGGACATC 5050 || |||| || || || || |||| | | ||| || | ||| | | || ||| Sbjct 12349 GGAAGGACGAACATGAATTTGCCCCCGGTTCGATCTGCCA-CTTGCGCGAGGCCGATATC 12291 Query 5051 AATCAGGAGGTCTATGGCCTGCCCGAGTATCTGAGCTCGCTGCACTCGGCCTGGCTGAAC 5110 || ||||| |||| |||||||| |||| ||| ||||||| || ||| ||| Sbjct 12290 AACCAGGAAATCTACGGCCTGCCGGAGTGGCTGGCAGCGCTGCAAAGCGCACTGCTCAAC 12231 Query 5111 GA-ATCGTCGACGCTGTTCCGGCGCAAGTATTACGAGAACGGCAGCCACGCCGGCTTCAT 5169 || | || | |||||||||||||||||||| ||| | ||||||||||| ||||| ||||| Sbjct 12230 GAGAGCG-CCACGCTGTTCCGGCGCAAGTACTACAACAACGGCAGCCATGCCGGTTTCAT 12172 Query 5170 CCTGTACATGACCGACGCCGCGCAGAAACAGGACGACGTGGAC 5212 ||||||||||||||||| |||||||| | || ||| | ||| Sbjct 12171 TCTGTACATGACCGACGCGGCGCAGAAGGAAGAGGACATCGAC 12129 Score = 120 bits (132), Expect = 7e-23 Identities = 199/286 (70%), Gaps = 10/286 (3%) Strand=Plus/Minus Query 5285 GGGAAGAAGGACGGCATCCAGCTCATTCCCGTGTCCGAGGTCGCCGCGAAGGACGAGTTC 5344 || ||||| |||||||| |||||||| || ||| |||||| || || |||||||| ||| Sbjct 12056 GGCAAGAAAGACGGCATTCAGCTCATCCCGGTGAGCGAGGTTGCGGCCAAGGACGAATTC 11997 Query 5345 TTCAACATCAAGAACGTGACGCGCGATGACCTGCTCGCCGCACACCGCGTGCCGCCGCAG 5404 | ||||| ||| | | || || || |||||||| || ||| | || |||||| Sbjct 11996 AGCTCGATCAAAAACATCAGCCGTGACGATCTGCTCGCGGCGTTGCGCATTCCACCGCAG 11937 Query 5405 TTGCTCGGCATCGTGCCGAGCAATTCGGGCGGGTTCGGCAC---GCCGGATACCGCTGCA 5461 ||| | |||||||||||| || ||||||| || || | || ||| | |||| Sbjct 11936 TTGATGGGCATCGTGCCGCAGAACGCGGGCGGTTTTGGGTCGTTGCGGGAGGCTGCTG-- 11879 Query 5462 CGCGTGTTCGGGCG--CAACGAAATCAGGCCGCTACAGGCACGCTTCGCCGAGCTGAACG 5519 ||| ||||| |||||| | |||| | ||||| | | ||| || | |||| Sbjct 11878 ---AGGTTTGGGCGGTCAACGAGCTGGAGCCGTTGCAGGCGAGGCTGGCCCAGGTCAACG 11822 Query 5520 ACTGGCTCGGCGACGAGGTCGTGAGGTTCGACGATTACGAGATTCC 5565 | ||||| || || ||||| || |||||| | || | ||| |||| Sbjct 11821 AGTGGCTGGGTGAAGAGGTTGTCAGGTTCAAGGAGTTTGAGCTTCC 11776 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117275572559376