Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_009237.1 Length=37446 Score E Sequences producing significant alignments: (Bits) Value seq3067 203 8e-48 seq4945 131 4e-26 >seq3067 Length=6736 Score = 203 bits (224), Expect = 8e-48 Identities = 386/556 (69%), Gaps = 12/556 (2%) Strand=Plus/Plus Query 25937 CGTATTGATCGGTGTCGCCGACGCGCTCGTAGACGCGGACATACGACTTGCTGCCGATCA 25996 |||| || ||||| || || || |||| || ||||||| || |||||| ||| | || Sbjct 4200 CGTACTGGTCGGTATCACCAACACGCTGATACACGCGGATGTAGGACTTGGAGCCAACCA 4259 Query 25997 CCTGGAGCGCCTCGCCGATCGCTCGCATCGCTTCCAGCCAGCGCGGATCGGTGATGTCCA 26056 ||||| || |||||||| ||| |||| || | ||||||| |||||| || |||| Sbjct 4260 CCTGGCAGGCGTCGCCGATGGCTTGCATGGCGCGCTGCCAGCGTTCATCGGTAATTTCCA 4319 Query 26057 GTCGGCGCAGCGCGAGCACGCGCCCGGTGTTGATCTGGCCTTCCTTGTCGGTCGCAAACG 26116 ||||||| ||| || ||||| | ||| ||| | ||||| | ||| ||| || | Sbjct 4320 TACGGCGCAACGCCAGGACGCGGGCTGTGCGGATGTCGCCTTTTTGGTCAGTCCGGAAGG 4379 Query 26117 CCTGCGTCACGATCGCCTGA--ATCTCAGGGCGGGCGTCCGTGGTCCAGTCACGCAGACA 26174 | | | || | || ||| | || ||||| || | ||||||||||| ||||| || Sbjct 4380 CATCATTTACCAGCG--TGACCACTTCGGGGCGTGCCCCGGTGGTCCAGTCCCGCAGGCA 4437 Query 26175 CTCGTCGATCATGGATTTGGCGGCCTGCAGGCGCTCGTCGAACGCAATGCGGTCCTGGAT 26234 ||||| |||| | || ||||| ||||| |||||||| || |||| ||||| | Sbjct 4438 TTCGTCAATCAATGCCCGCGCAGCCTGGAGGCGTTCGTCGAAAGCGATGCTTTCCTGTAC 4497 Query 26235 GGCCCGCTGGAT-TCGATAGCGACCGTCGAACGAGTACAGTGTGACGTTGCCCTTCTTAC 26293 ||| ||| ||| | || | || || ||||| | ||| |||| || |||||||| | Sbjct 4498 GGCACGCATGATCTTGA-AACGCCCATCGAAGCTGATCAGGCTGACATTTCCCTTCTTCC 4556 Query 26294 CGCCGACCTTCGAGCCGTATTCTTCGGCGGAGAGGTCGATGAAGGCCGAGATATCGCCGA 26353 |||||| || | |||||| | |||||| ||| |||| ||||| ||||| |||| Sbjct 4557 CGCCGATCTGGGCGCCGTACTGCTCGGCGCTGAGTTCGACAAAGGCTTCAATATCACCGA 4616 Query 26354 AGATTCGA-GCCTTCAGGTCGACGAGCCCCTTCGATCTC-GTTTTGGCTTCGTCCGCCAG 26411 | | ||| ||||| | | | || | | ||| | | | ||||| ||| |||| Sbjct 4617 A-AGCCGAGGCCTTGAATTTCGCCAG-CACGTCGCTGGCGGCGCGGGCTTTTTCCACCAG 4674 Query 26412 CTCGCGAACGAGTCGATCGCGCTCGCGGTCGATCGGTTTGATCATGCTTTCCGGGATCAG 26471 | | || | ||| ||||| ||||||| || ||||||||||||||||||||||| Sbjct 4675 GCCAAGCACCAAGGCATCCCGCTCCAGGTCGATAGGCTTGATCATGCTTTCCGGGATCAG 4734 Query 26472 GCAGCCTTT-CGCGTC 26486 | || ||| |||||| Sbjct 4735 TC-GCTTTTGCGCGTC 4749 >seq4945 Length=7671 Score = 131 bits (144), Expect = 4e-26 Identities = 458/708 (65%), Gaps = 18/708 (3%) Strand=Plus/Minus Query 906 TGCGCTGTCGTCGCGCCCGTCGAACCTGCGCGGCAAGCAAGGTCGCGTGATCATCGACGA 965 ||||||| | || ||||| |||||||||||| || || || | |||||||| Sbjct 6721 TGCGCTGACCAGTCGTCCGTCCAACCTGCGCGGCCGTCAGGGCGTTGTCGTGATCGACGA 6662 Query 966 AGCTGCGTTCCACGAGCAGCTCGGCGAGCTGCTGAAAGCTGCAATGGCCCTGCTGATGTG 1025 ||| |||||||| | | | | | ||||||||||||||| || ||||| ||| |||| || Sbjct 6661 AGCCGCGTTCCATGCGGACTTGGCCGAGCTGCTGAAAGCGGCCATGGCTCTGTTGATCTG 6602 Query 1026 GGGCGGTCAGGTCCACATCATTTCGACGCACGACGGCGTCGACAACGCGTTCAACGAGCT 1085 ||||||| | ||||| | || || ||||||||| || ||||| || ||||| || Sbjct 6601 GGGCGGTGAAGTCCATGTGATCAGCACCCACGACGGCACGGAGAACGCCTTTAACGACCT 6542 Query 1086 GGTCACGGACGTCCGTTCCGGCAAGAAGCCCTACAGC---CTGCATCGCATCACGTTCGC 1142 ||||| || |||| | ||| |||| | | || || ||| ||| |||| Sbjct 6541 GGTCAACGAAATCCGGGCTGGC---AAGCGCAATGGCGAAGTGTTCCGCTGCACTTTCGG 6485 Query 1143 CGACGCGGTTCAGGACGGGCTCTACCAGCGAATTTGCTTGCGCAAGGGCGAAGCCTGGAC 1202 || || ||| || || || ||| |||| | ||| |||| || | | | | || Sbjct 6484 TGAAGCCGTTGCCGATGGTCTGTACAAGCGTGTCTGCCTGCGTAAAG--GTATTGAGTAC 6427 Query 1203 GGCC--GAAGGCGAAGCCAAGTGGGTCAAGGACATTCGCGCGTCGTACGGCGCCGATGCC 1260 | | || | ||| | ||||| || | | || || | ||||||| | ||| Sbjct 6426 AGACTTGAGGATGAAATCGCCTGGGTGAATGGCGTTTACGGTTTCTACGGCGATGCAGCC 6367 Query 1261 GAGGAAGAGCTGGATTGCGTGCCGAAGAACAGCGGCGGCGCATGGCTCTCGCGCGCGCTG 1320 || ||||||||||| |||||||| | | ||||||| |||| ||| || ||| Sbjct 6366 GACGAAGAGCTGGACTGCGTGCCCACCCAGGGCGGCGGTGCATTCCTCAGCATGGCCCTG 6307 Query 1321 ATCGAGTCGCGCATGT---CG-GCCGATACGCCGGTGTTGCGCTGGGCCTGCAAACAGGG 1376 ||||| |||| || || |||| ||||||| |||| || | | || || Sbjct 6306 GTCGAGCAACGCA-GTAACCGCGCCG---TGCCGGTGCTGCGACTTGCGTACCCGCAAGG 6251 Query 1377 TTTTGAGGTGCTTCCGGATCACATCCGCGCAGCCGAATGCAGGGATTGGCTCGACGCGAC 1436 || || | | || || | ||| || || | ||| ||| ||| | | Sbjct 6250 TTACGAAACCATCGCCGAGCATCTGCGCCTGGCTGAGTCTCTGGAGTGGTGCGAAGAGCA 6191 Query 1437 GCTCGGCCCGCTGCTCGCGGCGCTTCCGGCCGACGCTCGCTCGTACAACGGCGAGGACTT 1496 | |||||||||| ||||| | ||| |||| | | | | ||| |||||| Sbjct 6190 TTTGCTCCCGCTGCTCTCGGCGATCCCGCTGGACGTACAGAGCTTCTATGGCATGGACTT 6131 Query 1497 CGGCCGCACGGGCGACCTGACGGTCCACGTGCCGCTGATCGAACAACAGAACCTGATCCG 1556 ||||||| | |||||||| |||| | |||| || || || ||||||| ||| | Sbjct 6130 CGGCCGCTCCGGCGACCTCTCGGTTTTCTGGCCGTTGCTCAAAGAACAGAATCTGCGCAA 6071 Query 1557 CCGTGTGCCGTTCATCGTCGAGCTGCGCAACGTGCCTTTCCGGCAGCA 1604 || ||| || | ||||||||||| ||||| || ||| ||| || Sbjct 6070 GCGCACGCCCTTTGTGGTCGAGCTGCGTAACGTCCCGTTCAAGCAACA 6023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 119694549227904