Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq3281 100 3e-16 >seq3281 Length=2714 Score = 100 bits (110), Expect = 3e-16 Identities = 199/291 (68%), Gaps = 8/291 (3%) Strand=Plus/Minus Query 20177 TCTATATGCGTTTTGTAGATGTGGGCATCTCCCAACGTGTGAATAAACTC-CCCGGGTCT 20235 || ||||| | || || | ||||||||| || | || || ||||| || |||| || Sbjct 2238 TCAATATGGTTATTATAAAGGTGGGCATCGCCAAGGGTATGGATAAAATCTCCCGACTCC 2179 Query 20236 AAGACCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGG 20295 | | || ||| || |||| ||| ||| | | || |||| ||||||||||||||| Sbjct 2178 A-GTCCGCAAACCTGTGCAACCATCATAGTCAGTAAGGCATAGGAGGCAATGTTAAAAGG 2120 Query 20296 AACTCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGC 20355 || |||| | || ||| | | |||||| ||||||||| || | |||||||| Sbjct 2119 TACCCCCAGAAAAATATCTGCACTTCGCTGATAAAGCTGACAGCTCAGTTTTCCGTCAGC 2060 Query 20356 TACATAAAATTGACATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGG 20415 ||||||||| || | || || ||||| ||||| ||||| | || ||| Sbjct 2059 TACATAAAACTGGAAAAAGGCATGGCAGGGTGGAAGTGCCATATGTTCTATCTCTGCCAC 2000 Query 20416 GTTCCACGCACACATAATGATTCTTCT---ATCGTGCGGATTATTTTTTAT 20463 ||||| ||| ||| ||| || ||||| |||| ||||| |||||||| Sbjct 1999 ATTCCAGGCAGACACAATAATCCTTCTGGAATCG---GGATTGTTTTTTAT 1952 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441329909598160