Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_009382.1 Length=38760 Score E Sequences producing significant alignments: (Bits) Value seq1445 345 1e-90 >seq1445 Length=14432 Score = 345 bits (382), Expect = 1e-90 Identities = 649/938 (69%), Gaps = 21/938 (2%) Strand=Plus/Plus Query 2968 GAACCGCACCACCTCGTCACCGATCCAATCGTTGA--TTGCCAACAGGCGGTCCTGCAGG 3025 ||||| || ||||| ||||| | ||| ||||||| | | | ||| | |||||| Sbjct 11793 GAACCTGACAACCTCTTCACCCAGCCACTCGTTGACCTGGGC--CAGCCTCGCCTGCAAC 11850 Query 3026 GGCTTCACCTCGTTGCGCGCGAACACCATCGCCGCCTTCTCCA-CGTCGCCGAATCCGCC 3084 |||| || ||||||| ||| | ||| || |||| | || || | || || ||||| Sbjct 11851 GGCTCCAGCTCGTTGACCGCCCAAACCTCAGCAGCCTCCCGCAACGAC-CCAAAACCGCC 11909 Query 3085 GGTGTTGTTCGGAATGATGCCCATGAGCTGCGGCGGTACGCGGTGCGCGGCGAGCTGGTC 3144 | ||| | ||| | ||||||||| | |||||| || | ||| ||| |||||| | || Sbjct 11910 CGCGTTCTGCGGCACGATGCCCATCAACTGCGGTGGAATGCGCAACGCCGCGAGCAGATC 11969 Query 3145 GTCGCGCGTGACGTTCTTGATGTTCCAGAACTCGTCCTTCGCGGCCACCTCGGACACCGG 3204 ||| || ||| ||| ||||| | ||| |||||||| || || |||||| |||||| Sbjct 11970 GTCACGGCTGATGTTTTTGATCGAGCTGAATTCGTCCTTGGCCGCAACCTCGCTCACCGG 12029 Query 3205 TAGCAACTGGATCCCATCCTTCTTGCCATTGGGCGCGTACATGAACAGGTTGCGGAAATT 3264 | | ||| || || || |||||||| |||||||||| ||||||||||| || || Sbjct 12030 GATGAGCTGAATGCCGTCTTTCTTGCCTGCCGGCGCGTACACAAACAGGTTGCGAAAGTT 12089 Query 3265 GCCCGGCCCCTTGGCACTCTTCATCGCCTCGCGCAGCGTGTCGACGTCCTCCTGCTTCTG 3324 ||| ||||| || | |||||| || |||||| | ||||| |||||| | |||||| Sbjct 12090 GCCTGGCCCTTTCGAGTTCTTCAGTGCGGTGCGCAGTGAGTCGATGTCCTCTTCCTTCTG 12149 Query 3325 CGCCGCATCGGTCATGTACAGGATGAAGCCGGCGTGCGAGCCGTTCTTGTAGTACCGGCG 3384 |||||| |||||||||||||| ||||| ||||| || |||||| ||||||||| ||| Sbjct 12150 CGCCGCGTCGGTCATGTACAGAATGAAACCGGCATGGCTGCCGTTGTTGTAGTACTTGCG 12209 Query 3385 CCGGAACAGCGTGGCCGATTCGTTCAACCACGTG-GCGTT-CAGCGCGGACAGGTATTCC 3442 ||||||||||||||| ||||| | | ||| || || |||||| | ||| | ||| Sbjct 12210 CCGGAACAGCGTGGCGCTCTCGTTGAGC--AGTGCGCTTTGCAGCGCTGCCAGCCACTCC 12267 Query 3443 GGCAGGCCGTACACCTCCTGATTGATGTCCGGTTCCTGGAGGTGGAACACCGAGCCGGCG 3502 ||||||||||| | ||||| ||||| || | || | | |||| | | ||| |||| | Sbjct 12268 GGCAGGCCGTAGATTTCCTGGTTGATATCGGCCTCGCGCAAGTGGCAGATCGAACCGGGG 12327 Query 3503 GCGAA--GGTGTACGGCTGCTGCCAGTTCTGCACaaaaaaaTAGGTGTTCAGGTCGAGCC 3560 || || ||| || | || |||| |||| ||||||| | || ||| | | Sbjct 12328 GCAAATTCATGTTCG--TCCTTCCAGCCACGCACCTGGTAATAGGTCTCCATGTCCACAC 12385 Query 3561 CGCGCCGAACGTACTTGGCCAGAGGCGTGTCGAGCCGGATTGTCCCGCCCAACACGTTTT 3620 | || || | |||||| ||||| || | || | || || || | || ||| | Sbjct 12386 CCCGGCGCATGTACTTCGCCAGTGGAGGCAGCAGGCCCATGGTGTTGCGGAGCATGTTGT 12445 Query 3621 CGCGGCGCTCCAGGTACGCA-TTGCCGAACACC--TGCCAGTCCAGCACCAGGCGCTCGA 3677 ||| |||||||| ||| ||||| ||||| |||||||||| | | |||| | Sbjct 12446 TGCGCTTTTCCAGGTA-GCAGTTGCC--ACACCAGAGCCAGTCCAGGGCGAACTGCTCAA 12502 Query 3678 ACGTCGCGCGCGACAACAGCGGGTGCGGGATGAACGTGCTGACCAGGATATTCCGCTTCA 3737 | | ||| ||||||| |||| || | |||||||| | | || || || ||||| | Sbjct 12503 AGGCTTGGCGACTCAACAGCCGGTGGGGAACGAACGTGCGGGCAAGCATGTTGCGCTTGA 12562 Query 3738 CGTAGACGGCCGAGCTGTGGTGCGCGGCGGCGCGGAACGAGCGCGCCAGGCCATCCCACG 3797 || | | |||| | ||| | || ||| ||| || ||||||||| ||| | Sbjct 12563 AGTTCA-GCCCGACTGGAGGTACACGCTGGCCCGGGTCGTTTTCGCCAGGCCGTCCATGG 12621 Query 3798 GCATGGGCGGTTCATACCACTGGCCCATGCGCATGCACTCGACGTAATCCAGCAACTCGC 3857 ||| || | |||| |||| |||| || | |||||| | ||| || || | ||| | Sbjct 12622 ACATCGGTGTTTCAAACCAACGGCCATTGGCCCAGCACTCCAGGTAGTCGAGGATCTCCC 12681 Query 3858 GCCGGTCCAGCACTTCGACGGGATCGCCGAAAGAGAAC 3895 | | |||| ||| ||||||| ||||||| |||| Sbjct 12682 GGCTATCCAACACGGGAGCGGGATCACCGAAAGTGAAC 12719 Score = 87.8 bits (96), Expect = 4e-13 Identities = 138/192 (72%), Gaps = 8/192 (4%) Strand=Plus/Plus Query 4192 TCCGTCCAGCCGGCGTCGAACTCCAGCCTGCCCTTGCTGATCACGTCGTGCGCCTTGAGC 4251 ||||||||||| || ||||||||||||||||| || |||| ||||||| ||||| ||| Sbjct 12998 TCCGTCCAGCCCGCATCGAACTCCAGCCTGCCGTTTTTGATGACGTCGTAAGCCTTCAGC 13057 Query 4252 ACCAGGGCGGTTTTCACGTCCACGGAATAGGTGAAGCCTTCGGCA--TCCGGACGGAACT 4309 |||||| |||||| || || || ||| |||| | | | | | ||| ||||| Sbjct 13058 ACCAGGCGGGTTTTGACTTCGGGTGAGTAGCTGAA--CGTGGTGATGTTCGGGAAGAACT 13115 Query 4310 TCTGCACCAG--GCGGAACACCGCATCGCCGATGCCGGTCCGGTCGATGCCCACGTAGGC 4367 || |||||| ||| || ||| | | ||| ||||||| ||||| || | ||||| Sbjct 13116 GCTTCACCAGCTGCGCCACGCCGGAAC-CCG-TGCCGGTGATATCGATCCCGATGTAGGT 13173 Query 4368 GACGTCGTAGCG 4379 || |||||| Sbjct 13174 CACCCAGTAGCG 13185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 123898961056536