Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_009603.1 Length=46365 Score E Sequences producing significant alignments: (Bits) Value seq848 136 1e-27 >seq848 Length=108724 Score = 136 bits (150), Expect = 1e-27 Identities = 142/185 (77%), Gaps = 6/185 (3%) Strand=Plus/Plus Query 42806 GCGCCGAAGCGCAGGGCGTCCATGACCGCGACCGGGCGAGCGCCCATGGAGATGATGTCG 42865 ||||||||||||||||||| |||| |||||| ||| || || ||||||| || | ||| Sbjct 55274 GCGCCGAAGCGCAGGGCGTTCATGGCCGCGATCGGCCGGGCACCCATGGTGAACACATCG 55333 Query 42866 CGGACGATGCCGCCCACACCCGTCGCCGCGCCCTGGAAGGGCTCGATGAACGAGGGGTGG 42925 || | ||| ||||| ||||| |||||||| ||||| |||||||||| | || |||||| Sbjct 55334 CGCAGGATACCGCCGACACCGGTCGCCGCACCCTGATAGGGCTCGATATAGGACGGGTGG 55393 Query 42926 TTGTGACTCTCCGCCTTGAACGTGACCGCCCA---TCCCTCGCCGACGTCGATGACGCCC 42982 ||||| |||||| |||||| ||| | || || ||||||| |||| || || Sbjct 55394 TTGTGGCTCTCCATCTTGAA---GACAACGCAGTCGCCATCGCCGATATCGACAACACCG 55450 Query 42983 GCGTT 42987 ||||| Sbjct 55451 GCGTT 55455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148232714448276