Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_009818.1 Length=36409 Score E Sequences producing significant alignments: (Bits) Value seq3974 291 2e-74 seq3067 122 2e-23 >seq3974 Length=4040 Score = 291 bits (322), Expect = 2e-74 Identities = 560/813 (69%), Gaps = 26/813 (3%) Strand=Plus/Minus Query 988 GCTATGTTTATGCCCTAAGTCACGTTAGACACCCCTAAAAAACCACCCTGCCAGGTGGTT 1047 ||||||||||||||||| || |||||||||| ||| ||||||||||||| | ||||||| Sbjct 2945 GCTATGTTTATGCCCTAGGTAACGTTAGACATCCC-AAAAAACCACCCTTGCCGGTGGTT 2887 Query 1048 GAGATGGAACG-TAGGCATGAACAGAACCGAAATCCCCCGCGACAACAACGTCCGCTGGG 1106 || | ||| |||||||||||| |||||||||||| | ||| | | | || |||| Sbjct 2886 ATGAATGGACGCTAGGCATGAACAAAACCGAAATCCCGCTTGACCCAACCCTGCGATGGG 2827 Query 1107 AGTGGATCAAATACCAGCTCCGCGCCAGGGGGTCGTCCCTGGCCGAGGTGGCCCGCTCCC 1166 | |||||||||||||| || || || | || |||| || || |||| || | Sbjct 2826 AATGGATCAAATACCAACTTCGTACCCGAGGTACGTCACTCGCAATCTTGGCGCGTGAAC 2767 Query 1167 TCGACGTATCCAGCC-CGGCAGTCAAAAACGCCAAGCTGAACCCCTACCCTCGGGTAGAG 1225 | ||||| | ||| | || ||||| ||||| |||| | | | || || || | ||| Sbjct 2766 TTGACGT-TACAGATGCTGCCGTCAAGAACGCTAAGCGCACCGCATATCCGCGAATGGAG 2708 Query 1226 CGCGCCATCGCTGCTGTGCTCGACCTCAGCCCCCTAGTGCTGTGGCCTGAGCGCTGGCTC 1285 || || || || || ||| | ||||| || | | ||||||| || || ||| | Sbjct 2707 CGAGCTATTGCCCGTGCGCTAGGCCTCAAGCCAATCGACTTGTGGCCCGAACGTTGGAAC 2648 Query 1286 GACGACGAGAATCCGAAGCGGCAACGGCCCAATCGCTCGGAGACCTTGCAGG-CATATGT 1344 | ||| | | || | || || | ||| | || | |||| || | Sbjct 2647 GCAAACG-GCACCCCA-----CACCGT---ATTCGGGTGCAGCGC--GCAGAACACAACG 2599 Query 1345 CAGACATAT-GCCAGGTGCTGAGGAAAATACCAGATACGCTGACCAAGCGCAGCGTAAAG 1403 || || | | |||| | || | | |||| | || || || |||||| Sbjct 2598 CA-ACTTCTAGCCAAGAGC------ATAACCCAGCTTA--TGCCCTTCGACACCGTAAAA 2548 Query 1404 CCGACGCGGGGGCTTGAACATGACCCGCCGCAAAGACGACCGCACCCTGGACATCTTCGA 1463 ||| | ||| || | |||||| ||| || || || || || | ||||||||| Sbjct 2547 CCGGCACGGAGGTATAAACATGCGCCGTGTAAAGGATGATCGTACGTTAGACATCTTCTC 2488 Query 1464 TGTTCCGCAGCCAGCCCGCGCTATACCCGGCGAGTGCAACTATGCCGCCCAGGTCAGCGA 1523 ||| || ||||||| | ||||| || || | ||||| ||||||| |||||||| || Sbjct 2487 TGTCCCACAGCCAGTTCTGGCTATCCCAGGGAATGGCAACAATGCCGCACAGGTCAGTGA 2428 Query 1524 GCTGGTCAGCGAAATTCTGAAGGCCGCCAACCTCGACCGTTACGAGATTGCCGCCCGCAT 1583 ||| ||||||| |||||||| | || | || ||||||||||| |||| || ||||| Sbjct 2427 ACTGATCAGCGAGATTCTGAAAGGTTCCGATCTGGACCGTTACGAAATTGGTGCACGCAT 2368 Query 1584 GTCGCGCCTCTCCGGCGATGACGTGAGCAAGAACATGCTCGACGCCTGGTCGAGTCCCGC 1643 ||| ||| | || |||||||||||||| ||| ||||||| ||||| |||||||| || || Sbjct 2367 GTCTCGCTTGTCTGGCGATGACGTGAGTAAGCACATGCTTGACGCGTGGTCGAGCCCAGC 2308 Query 1644 CCGAGTTGATCACAACTTGCCTTTCTACCGCGCCGCCCTCCTGGAGGACGTCTGTGCGAG 1703 |||| || || ||| |||| ||||| | ||| | || || || || || ||| || Sbjct 2307 CCGAACAGACCATAACCTGCCGTTCTATAGAGCCCCACTGCTTGAAGAAGTTTGTAGCAG 2248 Query 1704 CCACCTGCTGACCAACTGGCTGGTCGATGTGCGTGGCGGCCGCGTGGCCTATGGCCGAGA 1763 ||| | | ||| |||||||||| || ||||| ||||||||||| || || || || Sbjct 2247 TCACGTTTTAACCGACTGGCTGGTTGAGCAACGTGGTGGCCGCGTGGCTTACGGTCGCGA 2188 Query 1764 CGCACTGCTCGCCGAACTGGGCCGCCTGGAGCG 1796 ||||| ||| || || || || |||| ||| Sbjct 2187 TGCACTCAACGCGGAGCTTGGTCGTCTGGCGCG 2155 Score = 95.1 bits (104), Expect = 3e-15 Identities = 278/418 (67%), Gaps = 8/418 (2%) Strand=Plus/Minus Query 177 ATCCATCGCCCAAGCCAGACAACGCGCCCAATGATATCCAAGTCAGAAAGCTGGTCCTTG 236 ||||| | ||| ||| || ||||| ||||| || |||| ||| | || ||| || Sbjct 3763 ATCCAACCGCCAGCCCATACTACGCGGCCAATTATCTCCAGGTCGTTCAACTTATCCCTG 3704 Query 237 GGGACGACCATGTCCTTATACGCCTTGTTTTCGCTGATGATCGCGATAGAGCCATCGAAC 296 ||||| ||||| || || |||||||| || |||||||| ||||| || |||||| Sbjct 3703 GGGACAACCATATCGCGGTAGGCCTTGTTCTCACTGATGATGTGAATAGACCCGTCGAAC 3644 Query 297 TGCCGTTGTAAGCGCTTGGCGTAGAGCTGATCCCCGACCCGAATCACATAGATCGCTTCA 356 ||||| || | | || || ||||| || || | | ||| || || || | || || Sbjct 3643 TGCCGCTGGAGCCTTTTCGCATAGAGATGGTCATCCAGCCGGATGACGTATACAGCCTC- 3585 Query 357 TCCCGCACG-GTTCTAAGGTCATGGTCGATAACAACGGCGTCGCCATCCGACAGGAGGGG 415 |||| || | | || || ||||| || | || | |||||||| || || Sbjct 3584 TCCCTCAAGCGAGCTGCGGCTGTGGTCAATCATCACAGTATCGCCATCGCTTAGAAGTCC 3525 Query 416 TTCCATGGAGTCGCCCCCGACCCTTACTGCCGACATCCTGGTTGGCTCTAACCCCTTCTT 475 ||||| || || || | || | | ||| |||| | | | || | || | ||| Sbjct 3524 CTCCATCGAATCCCCGTCCACTCGGATTGCGGACAGTCGCGCAGAGTCCAGGCCTTGCTT 3465 Query 476 GCTCAAGC-TGTA-GCGCGTAAAGGCAAGCTGCGTAAGAACGTGTGCGCCTTCGCTCCAG 533 || |||| ||| ||| || || |||||||| || || || || |||||||||||| Sbjct 3464 GC-GAAGCGAGTACGCG-GTGAACGCAAGCTGGGTTAGGACAGTAGCCCCTTCGCTCCAG 3407 Query 534 CTTCCATGTCCCGCGCTGACCCT-CGCGTCATACAGGGGGACGTAGACGTATTGGTCC 590 || |||||||| || || | ||||| |||| || ||||| |||| | |||| Sbjct 3406 GCGCCGTGTCCCGCACT-ACAGTGGGCGTCGTACAAAGGCACGTAAGCGTACTTGTCC 3350 >seq3067 Length=6736 Score = 122 bits (134), Expect = 2e-23 Identities = 132/173 (76%), Gaps = 3/173 (2%) Strand=Plus/Minus Query 8290 ACGGCCAAGAACCGCA--CCGTCCACTGAGCGAAACCGCCCCGGCCTGGCCGGGACGGTC 8347 ||||||| |||| | || | || | ||||||| ||||||||| | | ||| ||||| Sbjct 2353 ACGGCCAGGAACAACTTGCCCTGCATTAAGCGAAATCGCCCCGGCGCG-CTGGGGCGGTC 2295 Query 8348 TGCCGGACGTGGTGGTCCGGTACTGATGAGCAGCCACCCATGACGAACGAAACTAAGACG 8407 ||||||||||||| |||||||||||||||||||||||||||||| ||||||| | Sbjct 2294 TGCCGGACGTGGTTGTCCGGTACTGATGAGCAGCCACCCATGACAGACGAAACACCCAAA 2235 Query 8408 GACCGCCAGCGCCGCCTGGCGCGAGAACGCCAACGGGCGAAGCGCGAGCGCGA 8460 | ||| | ||||||||| | || || |||| || ||||| ||||||| Sbjct 2234 CAGCGCAAAACCCGCCTGGCATGCGAGCGTAAACGTGCCCAGCGCAAGCGCGA 2182 Score = 118 bits (130), Expect = 2e-22 Identities = 219/321 (68%), Gaps = 9/321 (3%) Strand=Plus/Minus Query 8707 AAAATCCACATCGCCAAGACCCAGCTCGGCATGGACGATGACACCTATCGCGCATTGCTC 8766 || |||||||||||||||| | || || |||| || || ||||| || || ||| | Sbjct 1953 AAGATCCACATCGCCAAGAAGGACCTTGGGCTGGATGACGAAACCTACCGGGCCTTGTTG 1894 Query 8767 GCTCGCGTCGCGGGCGTGCGCTCGGCCAAGGACTTAGGGCCGCGCCAGGTCGATCAGGTG 8826 | ||||| ||||| ||||| |||||||| ||| | ||| |||||| ||| || Sbjct 1893 GGCCGCGTGGCGGGTGTGCGTTCGGCCAAAGACCTGACGCCACGCCAGATCGGCGCTGTA 1834 Query 8827 CTGGTCGAACTCCAGCGCTTGGGCTGG------AAACCGAAGAGCAATCGGCAAGGCCGG 8880 |||| ||| | |||||||||||| ||||||| | || ||||||||| Sbjct 1833 CTGGCCGAGTTTGCCCGCTTGGGCTGGGAGTCTAAACCGACTAAAAA---GCAAGGCCGC 1777 Query 8881 GCGACGCCAAAAGTGCCGCAAAACCGGCAAACCGTGCTGCGCAAAATCACCGCGCTCCTG 8940 | || | | | ||| | ||||| || || || | ||||| || | || Sbjct 1776 AAGGGACCGATGGCGGCGCCAGACCGGGTAAAGCTGGTGGGTAAAATAGAGGCTTTTCTC 1717 Query 8941 GCCAGCGCCCATCGCCCCTGGAGCTACGCCGACCACATGGCCCGGCGCATGTTCCAGGTC 9000 ||| ||| | ||| ||||| || |||||| ||||||| |||||||||| ||||| Sbjct 1716 GCCGAGGCCAAACGCTCCTGGGCATATGCCGACGGTATGGCCCTGCGCATGTTCAAGGTC 1657 Query 9001 GAGCGGGTCGAGTGGCTGGAC 9021 ||||| || || ||||| ||| Sbjct 1656 GAGCGAGTGGAATGGCTAGAC 1636 Score = 86.0 bits (94), Expect = 1e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 5683 CGCCTGTCTTCGTCCAGTTGCTGGCCGCCGAGGTGGCCCGCAGCAGCCAGACGAAGGCCG 5742 |||| | ||||| | |||| |||||||| || || || || | |||| |||||| Sbjct 5450 CGCCGTTGTTCGTACGCCTGCTCGCCGCCGAAGTCGCTGCCACCAACAAGACCAAGGCCA 5391 Query 5743 GCGAGGCAATCGGCATGAGCCGTTCGACCGTCAGCACCATCCTCGCCAACCGCTACCCGT 5802 || || |||||||||||||| || |||||||| | ||| |||||||||| ||| Sbjct 5390 GCCAGCGTATCGGCATGAGCCGCACGGCCGTCAGCCTGACCCTTTCCAACCGCTATGCGT 5331 Query 5803 CGCCCTCGACGATCCGCGTCGAGCGCCGCGTCCTGGCCGCGCTGAGCCGTATTGAGTGCC 5862 ||||| | | | || ||||| || || ||| | ||| | || ||||| || Sbjct 5330 CGCCCAGCATGGCGGGTGTTGAGCGGCGGGTAATGGAAACCCTGGGGCGCATTGAATGTG 5271 Query 5863 CGGCCTTGGGCGAGGCGGTGACCTCGGTCGAGTGC 5897 ||| ||| |||| | || ||| ||| | ||||| Sbjct 5270 TCGCCCTGGACGAGACCGTTACCACGGACCAGTGC 5236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 116376455570148