Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq762 187 5e-42 seq54 105 1e-17 >seq762 Length=50949 Score = 187 bits (206), Expect = 5e-42 Identities = 344/503 (68%), Gaps = 6/503 (1%) Strand=Plus/Plus Query 149168 ATTCGTCGGCATGACTGAGACGAAATTACATCCATATTGTTTTCTGTAAGCATCACACAT 149227 ||| || |||||||| |||| ||||||||| || || || ||||| || |||||||| Sbjct 30069 ATTGGTTGGCATGACGGAGATGAAATTACAACCGTACTGGGCCCTGTAGGCGTCACACAT 30128 Query 149228 CTCGATTCCGGCGATTTTCGCTATCGCGTATGGTTTGTTAGTGGGTTCGAGAAATCCTGT 149287 | || ||||| ||||| || || || || |||| || || ||| || || || || Sbjct 30129 TTTAATACCGGCAATTTTTGCAATGGCATAGGGTTCATTGGTTTCTTCCAGCAAGCCAGT 30188 Query 149288 CATCAGATATTCTTCCTTGATAGGATTTTGAGCTTCTTTTGGGTAAATGCAACTGCTACC 149347 | || ||||||||||| | || | | | ||| || |||||||| |||||| ||| Sbjct 30189 AAGAAGGTATTCTTCCTTCAGGGGCTGTGGGGCTAACTTCGGGTAAATACAACTGGAACC 30248 Query 149348 GAGAAACACGAGTTTTTTCACTCCGAACATTTT---GGACGCATGAATGACATTCGTCTG 149404 || |||| | ||||| | ||| |||| ||| |||| || ||||| |||| Sbjct 30249 CAGGAACATTAACTTTTTGATGCCG---TTTTTCCATGACTCATGGATCACATTGTTCTG 30305 Query 149405 AATCATCAGATTATCGTGAATAAAATCGCCCCCGAAGGAGTTGTTCGCGTGAATACCTCC 149464 ||| ||||| |||| || |||||| ||| | ||| |||||| || ||| || || Sbjct 30306 AATAGCAAGATTTTCGTAAAGAAAATCTGCCCTGTAGGTGTTGTTGGCAATAATTCCGCC 30365 Query 149465 TACTTTTGCAGCCGCGAGAAATACGTATTCTGGTAGTTCGATCTCGAAAAACGCGTTCAC 149524 ||||| || || ||||||||||| || || ||| ||| | || || || | | || Sbjct 30366 CACTTTGGCCGCAGCGAGAAATACATACTCCGGTTTTTCCTTTTCAAAGAAATCACTTAC 30425 Query 149525 TTCTCGTTGGTTTGTCAGGTCGAGATCTTTTGACGTTCGAGTGACGATGTTCATATATCC 149584 | | |||| || ||||| || | ||| || || || | | || || | || Sbjct 30426 TGCCTGTTGATTGCGGAGGTCCAGCTGGGCTGATGTCCGGGTCAAAAGATTATTAAAACC 30485 Query 149585 TTCTTTTTGCAAGAGTCTCATAAGAGCGCTTCCGACCATTCCTGTGTGACCTGCCACATA 149644 ||||||||||| || || || || |||||||| |||||| || ||||| Sbjct 30486 TTCTTTTTGCAGTTTTCGGTAAATCGCAGAACCCACCATTCCACGGTGACCGGCAACATA 30545 Query 149645 TATCTTCGAGTGTTTTTCCATTG 149667 ||| || ||||||||||||| || Sbjct 30546 TATTTTTGAGTGTTTTTCCAATG 30568 >seq54 Length=99412 Score = 105 bits (116), Expect = 1e-17 Identities = 564/881 (64%), Gaps = 35/881 (4%) Strand=Plus/Plus Query 242874 ATTCCCCATCCAGTATCCGGATATGTGGGATATGTATAAGAAGGCAGTGGCAACCTTTTG 242933 |||||| ||| | ||| ||||| ||| | | |||||||| |||| || | |||||| Sbjct 88051 ATTCCCTATCGAACATCATGATATATGGAACTTTTATAAGAAAGCAGAAGCTAGCTTTTG 88110 Query 242934 GACCACCGAGGAAGTTCCTCTGAACGCA-GACGTCGTCGACTGGCGCGAGAAACTCAATG 242992 |||| | ||||| || || || || ||| || |||||| || | | ||| Sbjct 88111 GACCGCTGAGGAGATTGA-CTTAAGTCAAGACCTCAAAGACTGG-GCCCGCT--TGAATA 88166 Query 242993 ACGACGAACGTCATTTCATCAAACACATTCTAGGTTTTTTCGCAGGCTCCGATGGTATTG 243052 |||| ||||| || || ||| ||| | | | ||| || |||| || ||||||| Sbjct 88167 ACGATGAACGACACTTTATCTCTCACGTATTGGCTTTCTTTGCAGCTAGTGACGGTATTG 88226 Query 243053 TGATGGAAAATCT-GCAGACCAACTTTAGTGTGGAAGTAACGGTTCCAGAGGCACGGCAA 243111 | | |||||| | ||||| |||||| | |||||| | | ||||||| ||| Sbjct 88227 TTAATGAAAATTTAGCAGAA-AACTTTGTAGCTGAAGTACAGTATACAGAGGC----CAA 88281 Query 243112 ----TTTTATGCTTACCAAACA--TTCAACGAATCTATCCATTCTGAACAATATGCTCTT 243165 ||||||| | ||| | | | |||| |||||||| ||| ||| | || Sbjct 88282 ATTCTTTTATGGCTTCCAGATTGCTGTAGAGAAT--ATCCATTCAGAAACCTATTCACTC 88339 Query 243166 CTTATCGACGCGCTTATTTCAGATGAACAAGAGCGAAACGAGCTTTTCGACGCCATCGAA 243225 || || || | ||| ||| ||||| |||| |||||| | |||||||| Sbjct 88340 CTCATTGATACCTACATTAAGGATCCTCAAGAAAGAAATCGCCTTTTCAATGCCATCGAC 88399 Query 243226 AACATTCCGGCGGT--TCATAACAAGGCAAAATGGGCTCAGAAGTGGCTAGAACCCGGTA 243283 | | | || | || | | || || ||| |||||||| ||| |||| || | Sbjct 88400 ACCCT--CGACTGTGTTAAGAAAAAAGCAGAATGGGCTTTACGTTGGATAGA-CCAAGCG 88456 Query 243284 AATCATTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGA 243343 | | |||||||| | ||| | |||| | || ||||| ||| | || || || | Sbjct 88457 AGT--TTTGCTGAAAGACTCATTGCCTTTGCAGCTGTAGAAGGCATTTTCTTCTCTGGTA 88514 Query 243344 GTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTG--TGATGCCTGGCCTCGGTCTGTC 243401 | || ||| | ||||| ||||| || ||||| | | ||||| || || | | || Sbjct 88515 GCTTTTGCTCGATCTTCTGGCTCA--AAAAAAGGGGATTAATGCCCGGTCTTAGCTTCTC 88572 Query 243402 TAACGAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTC 243461 ||||| |||| | | ||||| || | || | || | | || ||||| | Sbjct 88573 CAACGAACTCATTTCTAGGGACGAAGGATTGCATTGTGACTTTGCTTGCCTATTGTATAC 88632 Query 243462 AAAGCTCCAGAACAAGCTAC---CATTCGAAACGGTCAAACAAATCATCACAGAAGCAGT 243518 |||| | || || | || || |||| ||| ||| |||| || || || ||||| Sbjct 88633 CAAGCACTTAAAAAATCAACTTCCACAAGAAAGGGTAAAAGAAATTATTACCGATGCAGT 88692 Query 243519 TGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCG-GCTTATTGGCATGAACT 243577 | || ||| ||||||| | || || ||| | || ||| ||||||||||| Sbjct 88693 AGCAATTGAACAGGAATTTGTCACTGATGC-ATTACCTGTTAAGCTCATTGGCATGAATG 88751 Query 243578 CTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTT 243637 | || | ||| |||||||||||| || || || || || | || | | | || | Sbjct 88752 CCGACTTGATGAAACAGTACATCGAGTTTGTCGCTGATCGGTTATTACTTGAATTAGGGT 88811 Query 243638 ATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAG 243697 | || || |||||| | || || || | |||||||||| | || || || |||| Sbjct 88812 GTTCTAAGGTATACAACGTGACCAATCCATTCGACTTTATGGAGATGATCTCCCTACAAG 88871 Query 243698 GGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCAA 243738 ||||||| || ||||| ||||| || || |||| || ||| Sbjct 88872 GGAAAACCAATTTCTTTGAAAAACGCGTAGGTGAATACCAA 88912 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102770148326900