Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_010116.1 Length=58663 Score E Sequences producing significant alignments: (Bits) Value seq654 98.7 4e-16 >seq654 Length=148201 Score = 98.7 bits (108), Expect = 4e-16 Identities = 143/200 (72%), Gaps = 3/200 (2%) Strand=Plus/Plus Query 4998 AGGCCGCGCTGCTCGTGGTGGATGAGTATTCCATGATTGACGAACAGATGGGGGAGGACT 5057 ||||| |||| |||| || || |||| || ||| | ||||||||| | || || Sbjct 11383 AGGCCAAGCTGATCGTCGTCGACGAGTGCTCGATGGTGGACGAACAGCTCGGCCGCGATC 11442 Query 5058 TGCTCAGCTTCGGTTGCCCGATCCTCGCCCTGGGCGATCCGGGGCAGCTCCCGCCCGTGG 5117 | | |||||||| ||| || || | |||||||| || || ||||| |||||| | Sbjct 11443 TCATGAGCTTCGGCACCCCCATTCTGGTGCTGGGCGACCCTGGCCAGCTGCCGCCCATAT 11502 Query 5118 GCGGCACCCCCTTCTTCAA-GAACA--AGCCCGACATCCTGCTCACGGAGATTCACCGCC 5174 |||| | |||||||| ||||| |||| || ||||||||| || || ||||| | Sbjct 11503 CCGGCGGCGGCTTCTTCACCGAACACGAGCCGGATTTCCTGCTCAGCGAAATCCACCGGC 11562 Query 5175 AGGCCCAGGACAACCCGATC 5194 |||| | |||||||||||| Sbjct 11563 AGGCGCGCGACAACCCGATC 11582 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 187582681471500