Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq322 89.7 6e-13 >seq322 Length=112280 Score = 89.7 bits (98), Expect = 6e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||||||||||||||| | || ||||| | || || ||||| || ||||| |||| Sbjct 11232 ACCTCCTCTTAAACGGAGTACTAAATGAAGGGTAGATTCTTTTTGGATGTTGTAGTCAGA 11173 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||||| || | || |||| || |||||||| || || |||| || ||||||| ||| Sbjct 11172 GAGAGTACGACCATCTTCTAATTGTTTACCAGCAAAAATAAGTCTTTGTTGGTCGGGTGG 11113 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | | || ||||| |||||| |||| | | | || || ||| || Sbjct 11112 GATACCTTCTTTGTCTTGGATTTTGGTCTTGACATTTTCAATGGTATCAGAACCTTCAAC 11053 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 || | || || ||||| || || | ||||||||||||||||||||| Sbjct 11052 TTCTAAGGTAATAGTTTTACCGGTCAAGGTCTTTACAAAGATTTGCATT 11004 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| |||||||| | | |||||||| | ||| || ||||| || ||||| |||| Sbjct 11916 ACCACCTCTTAATCTAAGTACCAAATGGAGTGTTGATTCTTTTTGGATGTTGTAGTCAGA 11857 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||||| || | || |||| || |||||||| || ||||||| || || |||| ||| Sbjct 11856 GAGAGTACGACCATCTTCTAATTGTTTACCAGCAAAAATGAGTCTTTGTTGATCGGGTGG 11797 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | | || ||||| |||||| |||| | | | || || ||| || Sbjct 11796 GATACCTTCTTTGTCTTGGATTTTGGTCTTGACGTTTTCAATGGTATCAGAACCTTCTAC 11737 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | ||||| ||||| || || | |||||||||||||||||||| Sbjct 11736 TTCCAAGGTGATTGTTTTACCGGTCAAGGTCTTTACAAAGATTTGCAT 11689 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543160013296160