Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq540 136 4e-27 seq322 132 5e-26 seq982 96.9 3e-15 >seq540 Length=89862 Score = 136 bits (150), Expect = 4e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 64226 AATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGC 64285 |||||||| || ||||| | || ||||||||||| ||||||||||| | || ||| || Sbjct 84532 AATCTAAGAACGAGATGGAGGGTTGATTCTTTTTGGATGTTGTAATCAGAGAGGGTACGA 84473 Query 64286 GCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCT 64345 | ||||| | || || |||||| |||| || | || || ||||| || || |||||| Sbjct 84472 CCATCTTCCAATTGTTTACCGGCAAAAATAAGTCTTTGTTGATCGGGTGGGATACCTTCT 84413 Query 64346 TTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTT 64405 || ||||| ||||| ||| ||| || | || ||| | || ||||||| || Sbjct 84412 TTATCTTGGATTTTGGTCTTGACATTTTCAATGGTGTCAGAACCTTCAACTTCTAATGTG 84353 Query 64406 ACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | ||| || |||||||| ||||| || ||||||||||| Sbjct 84352 ATGGTTTTACCGGTCAAGGTTTTAACAAAAATTTGCAT 84315 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 64226 AATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGC 64285 |||||||| || | ||| | || ||||| ||||| ||||| ||||| | || ||| || Sbjct 83848 AATCTAAGTACCAAATGGAGGGTTGATTCCTTTTGGATGTTATAATCAGAGAGGGTACGA 83789 Query 64286 GCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCT 64345 | ||||| | || || |||||| | || || | || |||||||| || || |||||| Sbjct 83788 CCATCTTCCAATTGTTTACCGGCAAAGATTAGTCTTTGTTGGTCGGGTGGGATACCTTCT 83729 Query 64346 TTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTT 64405 || ||||| ||||| ||| ||| || | || ||| | || ||||||| || Sbjct 83728 TTATCTTGGATTTTGGTCTTGACATTTTCAATGGTGTCAGAACCTTCAACTTCTAATGTG 83669 Query 64406 ACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTTAATAAT 64452 | || || ||||| ||||| ||||| |||||||||||||||| ||| Sbjct 83668 ATAGTTTTTCCGGTTAAAGTCTTTACAAAAATTTGCATTTTAAAAAT 83622 Score = 120 bits (132), Expect = 3e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 64228 TCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGC 64287 ||| || |||| ||||| || ||||||||||| ||||| ||||| | || ||| || | Sbjct 84074 TCTGAGGACTAAATGAAGGGTTGATTCTTTTTGGATGTTATAATCAGAGAGGGTACGACC 84015 Query 64288 GTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTT 64347 ||||| | || || |||||| |||| || | || || ||||| || || |||||||| Sbjct 84014 ATCTTCCAATTGTTTACCGGCAAAAATAAGTCTTTGTTGATCGGGTGGGATACCTTCTTT 83955 Query 64348 TTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTAC 64407 ||||| || || ||| || || | || ||| | | || ||||||| || | Sbjct 83954 ATCTTGGATCTTGGTCTTGACGTTTTCAATGGTGTCAGAGCCCTCAACTTCTAATGTGAT 83895 Query 64408 GGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || |||||||| ||||| || ||||||||||| Sbjct 83894 TGTTTTACCGGTCAAGGTTTTAACAAAAATTTGCAT 83859 >seq322 Length=112280 Score = 132 bits (146), Expect = 5e-26 Identities = 159/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 64228 TCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGC 64287 ||| || |||| ||| | || ||||||||||| |||||||| || | || ||| || | Sbjct 11676 TCTGAGAACTAAATGGAGAGTAGATTCTTTTTGGATGTTGTAGTCAGAGAGGGTACGACC 11617 Query 64288 GTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTT 64347 |||||| | || || || ||| ||||||| | || |||||||| || || |||||||| Sbjct 11616 GTCTTCTAATTGTTTACCAGCAAAAATGAGTCTTTGTTGGTCGGGTGGGATACCTTCTTT 11557 Query 64348 TTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTAC 64407 ||||| || || ||||||| ||| | |||||| | || ||||||| || | Sbjct 11556 GTCTTGGATCTTGGTCTTTACATTCTCAATGGTATCAGAACCTTCAACTTCTAAGGTAAT 11497 Query 64408 GGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || |||||||| || ||||| || |||||||| Sbjct 11496 AGTTTTACCGGTCAAGGTCTTTACAAAGATTTGCAT 11461 Score = 118 bits (130), Expect = 1e-21 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || |||| ||||| || ||||||||||| |||||||| || | || || || | ||| Sbjct 11216 AGTACTAAATGAAGGGTAGATTCTTTTTGGATGTTGTAGTCAGAGAGAGTACGACCATCT 11157 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || | || || || ||| |||| || | || |||||||| || || |||||||| ||| Sbjct 11156 TCTAATTGTTTACCAGCAAAAATAAGTCTTTGTTGGTCGGGTGGGATACCTTCTTTGTCT 11097 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || ||||| ||| ||| || | |||||| | || ||||||| || | || Sbjct 11096 TGGATTTTGGTCTTGACATTTTCAATGGTATCAGAACCTTCAACTTCTAAGGTAATAGTT 11037 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || |||||||| || ||||| || ||||||||| Sbjct 11036 TTACCGGTCAAGGTCTTTACAAAGATTTGCATT 11004 Score = 111 bits (122), Expect = 2e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 64228 TCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGC 64287 ||| || |||| ||| | || ||||||||||| |||||||| || | || ||| || | Sbjct 12132 TCTGAGGACTAAATGGAGAGTTGATTCTTTTTGGATGTTGTAGTCAGAGAGGGTACGACC 12073 Query 64288 GTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTT 64347 ||||| | ||||| || ||| |||| || | || || ||||| || || ||||| || Sbjct 12072 ATCTTCCAATTGCTTACCAGCAAAAATAAGTCTTTGTTGATCGGGTGGGATACCTTCCTT 12013 Query 64348 TTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTAC 64407 ||||| || || ||| ||| || | || ||| | | || ||||||| || | Sbjct 12012 ATCTTGGATCTTGGTCTTGACATTTTCAATGGTGTCAGAGCCTTCAACTTCTAAGGTAAT 11953 Query 64408 GGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || |||||||| || || || ||||||||||| Sbjct 11952 AGTTTTACCGGTCAAGGTCTTGACAAAAATTTGCAT 11917 Score = 109 bits (120), Expect = 5e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 64226 AATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGC 64285 |||||||| || | ||| | || ||||||||||| |||||||| || | || || || Sbjct 11906 AATCTAAGTACCAAATGGAGTGTTGATTCTTTTTGGATGTTGTAGTCAGAGAGAGTACGA 11847 Query 64286 GCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCT 64345 | ||||| | || || || ||| ||||||| | || || ||||| || || |||||| Sbjct 11846 CCATCTTCTAATTGTTTACCAGCAAAAATGAGTCTTTGTTGATCGGGTGGGATACCTTCT 11787 Query 64346 TTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTT 64405 || ||||| ||||| ||| || || | |||||| | || ||||| | || Sbjct 11786 TTGTCTTGGATTTTGGTCTTGACGTTTTCAATGGTATCAGAACCTTCTACTTCCAAGGTG 11727 Query 64406 ACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | || || |||||||| || ||||| || |||||||| Sbjct 11726 ATTGTTTTACCGGTCAAGGTCTTTACAAAGATTTGCAT 11689 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | ||| || |||| ||| | || ||||||||||| |||||||| || | Sbjct 11460 ACCACCACGGAGTCTGAGGACTAAATGGAGAGTTGATTCTTTTTGGATGTTGTAGTCGGA 11401 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || || | ||||| | || || || ||| |||| || | || || ||||| || Sbjct 11400 TAAAGTACGACCATCTTCCAATTGTTTACCAGCAAAAATAAGTCTTTGTTGATCGGGTGG 11341 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 || |||||||| ||||| ||||| || || || | || ||| | || || Sbjct 11340 GATACCTTCTTTGTCTTGGATTTTGGTTTTAACGTTTTCGATGGTGTCAGAACCTTCAAC 11281 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| || | || || |||||||| || || || ||||||||||| Sbjct 11280 TTCTAAGGTAATAGTTTTACCGGTCAAGGTCTTGACAAAAATTTGCAT 11233 >seq982 Length=41121 Score = 96.9 bits (106), Expect = 3e-15 Identities = 156/223 (70%), Gaps = 1/223 (0%) Strand=Plus/Plus Query 64228 TCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGC 64287 ||| || |||| ||| | || ||||||||||| |||||||| || | | || || | Sbjct 2607 TCTGAGGACTAAATGGAGAGTTGATTCTTTTTGGATGTTGTAGTCGGATAAAGTACGACC 2666 Query 64288 GTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTT 64347 ||||| | || || ||||| |||| || | || || || || || || |||||||| Sbjct 2667 ATCTTCTAATTGTTTACCGGCGAAAATAAGTCTTTGTTGATCAGGTGGGATACCTTCTTT 2726 Query 64348 TTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTAC 64407 ||||| || || ||| ||| || | || ||| | || ||||| | || | Sbjct 2727 GTCTTGAATCTTGGTCTTGACATTTTCAATGGTGTCAGAACCTTCAACTTCCAAGGTGAT 2786 Query 64408 GGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT-TTTAAT 64449 || || |||||||| || ||||| ||||||||||| |||||| Sbjct 2787 TGTTTTACCGGTCAAGGTCTTTACAAAAATTTGCATGTTTAAT 2829 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 64228 TCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGC 64287 ||| || |||| ||| | || ||||||||||| ||||||||||| | || ||| || | Sbjct 1923 TCTGAGGACTAAATGGAGAGTAGATTCTTTTTGGATGTTGTAATCAGAGAGGGTACGACC 1982 Query 64288 GTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTT 64347 ||||| | || || || || |||| || | || || ||||| || || |||||||| Sbjct 1983 ATCTTCCAATTGTTTACCAGCGAAAATAAGTCTTTGTTGATCGGGTGGGATACCTTCTTT 2042 Query 64348 TTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTAC 64407 ||||| || || ||| || || | || || | || || |||| || | Sbjct 2043 GTCTTGGATCTTGGTCTTGACGTTTTCAATGGTGTCTGAACCTTCTACCTCTAAGGTGAT 2102 Query 64408 GGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || |||||||| || || || ||||||||||| Sbjct 2103 AGTTTTACCGGTCAAGGTCTTGACAAAAATTTGCAT 2138 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | |||||| || | ||| | || ||||| |||||||||||||| || | Sbjct 2367 ACCACCACGGAGTCTAAGTACCAAATGGAGGGTTGATTCCTTTTGAATGTTGTAGTCGGA 2426 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || || | ||||| | || || || || |||| || | || || ||||| || Sbjct 2427 TAAAGTACGACCATCTTCCAATTGTTTACCAGCGAAAATAAGTCTTTGTTGATCGGGTGG 2486 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 || |||||||| ||||| || || ||| ||| || | || ||| | || || Sbjct 2487 GATACCTTCTTTGTCTTGGATCTTGGTCTTGACATTTTCAATGGTGTCAGAACCTTCAAC 2546 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| | || | || || |||||||| || || || ||||||||||| Sbjct 2547 TTCCAAGGTGATAGTTTTACCGGTCAAGGTCTTGACAAAAATTTGCAT 2594 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499596247016560