Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_011056.1 Length=75811 Score E Sequences producing significant alignments: (Bits) Value seq848 228 4e-55 seq2068 212 3e-50 seq6252 113 2e-20 >seq848 Length=108724 Score = 228 bits (252), Expect = 4e-55 Identities = 441/647 (68%), Gaps = 13/647 (2%) Strand=Plus/Plus Query 65964 CCGAGGGGCCGGGTAGTGGAGATCTACGGTCCTGAGTCTTCAGGGAAGTCAACGTTGTGC 66023 |||| ||||| | || ||||| ||||| || || || || ||| |||| || Sbjct 34642 CCGAAAGGCCGCATTGTCGAGATTTACGGGCCGGAAAGCTCGGGTAAGACAACCCTGGCG 34701 Query 66024 CTCCACGCGGTGGCCAATGCCCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCCGAA 66083 || || || | || | ||||||||| || |||| | ||||| | ||||||| ||| Sbjct 34702 CTGCATACGATTGCGGAAGCCCAGAAGAAGGGCGGCATCTGCGCCTTCGTCGACGCGGAA 34761 Query 66084 CATTCTCTCGACCCTGAGTACGCCGCGGCGCTCGGGGTGGATGTCGACAATCTCGTGGTT 66143 ||| | || ||||| | || ||| ||| || |||||| | || ||||| || | Sbjct 34762 CATGCGCTGGACCCGGTCTATGCCCGCAAGCTGGGCGTGGATCTGGAGAATCTGCTGATC 34821 Query 66144 GTGCAGCCAGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTTCTCGTCAAGTCTGGC 66203 |||||| || || ||||||||||| ||||||||| ||| || || || || Sbjct 34822 TCGCAGCCCGATACGGGCGAGCAGGCGCTGGAGATCACCGACACGCTGGTGCGTTCCGGT 34881 Query 66204 GAGGTTTCCATCATC--GTTGTGGACTCTGTGGCGGCCCTGGTGCCGCGGGCGGAGCTCG 66261 | | | | || || || || || || || || || || ||||| ||||| ||| Sbjct 34882 GCGAT--CGATGTTCTGGTGGTCGATTCCGTTGCCGCTTTGACCCCGCGTGCGGAAATCG 34939 Query 66262 AAGGGGACATCGGGGACTCGCACGTCGGCCTGCATGCCCGCCTGATGTCTCAGGCCATGC 66321 |||| || || || || || | | ||||||||| |||||||||||| ||||| ||| Sbjct 34940 AAGGCGAGATGGGCGATTCTCTCCCCGGCCTGCAGGCCCGCCTGATGAGCCAGGCGCTGC 34999 Query 66322 GCAAGCTGACCGGCACGATTGCCAGCACCAAC---ACGCTCACCCTGTGGGTGAATCAGC 66378 |||||||||||| | ||| || | ||||| | | ||| | | | || ||| Sbjct 35000 GCAAGCTGACCGCATCCATTTCCCGTTCCAACTGCATGGTCA---TTTTCATCAACCAGA 35056 Query 66379 TGCGCGAGAAGATCGGCAACGTGGGCTACGGCCCGAATGAGACCACCACCGGTGGTAAGG 66438 | ||| |||||||||| ||| | ||| || ||| ||||| || || || || | Sbjct 35057 TCCGCATGAAGATCGGC---GTGATGTTCGGTTCGCCTGAAACCACGACGGGCGGCAATG 35113 Query 66439 CTCTGCGCTTCTACGCCTCGGTGCGTATGGATGTCCGCAGGATCGCCACCGAGAAGGAAG 66498 | ||| ||||| || ||||||||| | ||| ||||| | |||| | ||||||| Sbjct 35114 CGCTGAAATTCTATGCTTCGGTGCGTCTCGATATCCGCCGCATCGGTGCGCTGAAGGAAC 35173 Query 66499 GCGATGAGGCTGTCGGCAACCGCACGCGCGTGAAGGTTGTCAAGAACAAGCTGGCGCCTC 66558 | || |||| |||||||||| || ||||| ||||| |||||||||||||| ||||| | Sbjct 35174 GTGACGAGGTGGTCGGCAACCAGACCCGCGTCAAGGTGGTCAAGAACAAGCTTGCGCCCC 35233 Query 66559 CGCACCGCCAGGCTGAGTTTTCCATCGTCTACGGCGAGGGCATTTCC 66605 | | |||| || || |||| | || ||||| ||| ||||| Sbjct 35234 CCTTCAAGCAGGTCGAATTCGACATCATGTATGGCGAAGGCGTTTCC 35280 >seq2068 Length=4790 Score = 212 bits (234), Expect = 3e-50 Identities = 444/661 (67%), Gaps = 3/661 (0%) Strand=Plus/Plus Query 65917 CCACCGGCTCGATAGCTCTGGACGCCGCTCTCGGCATCGGGGGGTATCCGAGGGGCCGGG 65976 |||| ||||| | | ||||||| ||| |||||||| || || || | ||||| Sbjct 4130 CCACTGGCTCTCTGGGTCTGGACATCGCGCTCGGCATTGGCGGCCTGCCAAAAGGCCGTA 4189 Query 65977 TAGTGGAGATCTACGGTCCTGAGTCTTCAGGGAAGTCAACGTTGTGCCTCCACGCGGTGG 66036 | || ||||||||||||||||| ||||| || || | || || ||| | | | | Sbjct 4190 TCGTTGAGATCTACGGTCCTGAATCTTCCGGTAAAACCACCCTGACCCTGTCGGTGATTG 4249 Query 66037 CCAATGCCCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCCGAACATTCTCTCGACC 66096 || | || || || || | || | || | | |||| ||||| || | || || | Sbjct 4250 CCCAGGCACAAAAAATGGGCGCCACCTGTGCGTTCGTCGATGCCGAGCACGCCCTGGATC 4309 Query 66097 CTGAGTACGCCGCGGCGCTCGGGGTGGATGTCGACAATCTCGTGGTTGTGCAGCCAGACA 66156 |||| ||||||| ||| || || | || ||| | || ||||| ||| || |||| Sbjct 4310 CTGAATACGCCGGCAAGCTGGGCGTCAACGTTGACGACCTGCTGGTTTCGCAACCGGACA 4369 Query 66157 CTGGCGAGCAGGCCCTGGAGATCGTTGACCTTCTCGTCAAGTCTGGCGAGGTTTCCATCA 66216 | || ||||| || ||||| ||| ||| | || || || || | | | | Sbjct 4370 CCGGTGAGCAAGCGCTGGAAATCACCGACATGCTGGTGCGCTCCAACGCCATCGACGTGA 4429 Query 66217 TCGTTGTGGACTCTGTGGCGGCCCTGGTGCCGCGGGCGGAGCTCGAAGGGGACATCGGGG 66276 |||| || ||||| ||||| |||||||| || ||| || ||||||| || || || | Sbjct 4430 TCGTGGTCGACTCCGTGGCAGCCCTGGTACCCAAGGCTGAAATCGAAGGCGAAATGGGCG 4489 Query 66277 ACTCGCACGTCGGCCTGCATGCCCGCCTGATGTCTCAGGCCATGCGCAAGCTGACCGGCA 66336 || |||||| ||||| || |||||| ||||||| |||||| |||| || | ||||| | Sbjct 4490 ACATGCACGTGGGCCTTCAAGCCCGCTTGATGTCCCAGGCCCTGCGTAAAATCACCGGTA 4549 Query 66337 CGATTGCCAGCACCAACACGCTCACCCTGTGGGTGAATCAGCTGCGCGAGAAGATCGGCA 66396 || | | ||||| | | | | || ||| | || |||||||||| Sbjct 4550 ACATCAAGAACGCCAACTGCTTGGTGATCTTCATCAACCAGATCCGGATGAAGATCGGCG 4609 Query 66397 ACGTGGGCTACGGCCCGAATGAGACCACCACCGGTGGTAAGGCTCTGCGCTTCTACGCCT 66456 || | | ||||| || ||||||||||| ||||| || ||| |||||||| | Sbjct 4610 TGATGTTCGGCAGCCCG---GAAACCACCACCGGGGGTAACGCGCTGAAGTTCTACGCTT 4666 Query 66457 CGGTGCGTATGGATGTCCGCAGGATCGCCACCGAGAAGGAAGGCGATGAGGCTGTCGGCA 66516 |||| ||| |||| |||| | | | | | | ||||||||| || |||| ||| || | Sbjct 4667 CGGTCCGTCTGGACATCCGTCGTACTGGCGCGGTGAAGGAAGGTGACGAGGTTGTTGGTA 4726 Query 66517 ACCGCACGCGCGTGAAGGTTGTCAAGAACAAGCTGGCGCCTCCGCACCGCCAGGCTGAGT 66576 | || ||||| || || || ||||||||| |||| || ||| ||| ||||| |||| Sbjct 4727 GCGAAACCCGCGTTAAAGTCGTGAAGAACAAGGTGGCCCCGCCGTTCCGTCAGGCCGAGT 4786 Query 66577 T 66577 | Sbjct 4787 T 4787 >seq6252 Length=969 Score = 113 bits (124), Expect = 2e-20 Identities = 215/317 (68%), Gaps = 0/317 (0%) Strand=Plus/Minus Query 66432 GGTAAGGCTCTGCGCTTCTACGCCTCGGTGCGTATGGATGTCCGCAGGATCGCCACCGAG 66491 ||||| || ||| |||||||| ||||| ||| |||| |||| | | | | | | | Sbjct 969 GGTAACGCGCTGAAGTTCTACGCTTCGGTCCGTCTGGACATCCGTCGTACTGGCGCGGTG 910 Query 66492 AAGGAAGGCGATGAGGCTGTCGGCAACCGCACGCGCGTGAAGGTTGTCAAGAACAAGCTG 66551 |||||||| || |||| ||| || | | || ||||| || || || ||||||||| || Sbjct 909 AAGGAAGGTGACGAGGTTGTTGGTAGCGAAACCCGCGTTAAAGTCGTGAAGAACAAGGTG 850 Query 66552 GCGCCTCCGCACCGCCAGGCTGAGTTTTCCATCGTCTACGGCGAGGGCATTTCCCGCGAG 66611 || || ||| ||| ||||| ||||| || |||||||| |||| || | || | Sbjct 849 GCCCCGCCGTTCCGTCAGGCCGAGTTCCAGATTCTCTACGGCAAGGGTATCTACCTGAAC 790 Query 66612 GCTGAACTCCTCGACATGGCCGTTTCCCGAGGGCTCATCAAGAAGTCTGGGGCCTGGTTC 66671 | || | ||||| ||| ||| | || || || |||| || || ||||||| Sbjct 789 GGCGAGATGATCGACCTGGGCGTGCTGCACGGTTTCGTCGAGAAATCCGGTGCCTGGTAT 730 Query 66672 AAGTACGGGGACAAGAACATCGGCCAGGGCAAGCCCAAGACCGTGCAGTGGCTGAAGGAC 66731 ||| | || || ||||||||||||||| |||| | | ||| || ||| Sbjct 729 GCCTACAACGGCAGCAAGATCGGCCAGGGCAAGGCCAACTCGGCCAAGTTCCTTGCGGAT 670 Query 66732 AACCCGGACGTCGCCGC 66748 |||||||| || ||||| Sbjct 669 AACCCGGATGTTGCCGC 653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242447426990408