Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq1819 136 4e-27 seq332 104 2e-17 >seq1819 Length=3716 Score = 136 bits (150), Expect = 4e-27 Identities = 404/623 (65%), Gaps = 0/623 (0%) Strand=Plus/Minus Query 94012 ATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCC 94071 || ||| || ||| || || || || | || |||| || | ||||||| ||| || Sbjct 2552 ATTTCACAAAGCGCAGGTGGTATTGGTTTAAGCATCCATAACATCCGTGCCACGGGATCT 2493 Query 94072 TACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAAC 94131 || || | || || || || ||| ||| || | || |||||| | || || ||| Sbjct 2492 TATATTGGTGGAACAAACGGGACCAGCAATGGGATTGTACCTATGTTGAAAGTATTTAAC 2433 Query 94132 AACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTAT 94191 | | || || || |||||||||||||| || | | || ||| |||| || | || Sbjct 2432 GATACCGCCCGTTATGTGGACCAGGGTGGAGGTAAACGTAAAGGTGCTTTTGCCATTTAC 2373 Query 94192 CTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAAC 94251 || ||||| ||||| || || |||| | ||| | |||||||| || ||||| || || Sbjct 2372 CTGGAGCCATGGCATGCAGATGTGCTGAGTTTTCTGGACCTGCGTAAAAACCATGGTAAA 2313 Query 94252 GATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAA 94311 || | |||||||| | ||||| || || ||||| ||||| || |||| | Sbjct 2312 GAAGAACTTCGTGCCAGAGATTTATTCTATGCCCTTTGGGTATGTGACCTGTTCATGAGA 2253 Query 94312 CGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCC 94371 | || || ||||| | ||||||| | || ||||| ||||| || |||||| | Sbjct 2252 AGGGTAGAAGAAAACGGAGACTGGAGTTTATTCTGTCCTCATGAAGCCCCGGGACTGGCA 2193 Query 94372 GACGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGGCC 94431 || | ||| | || || | || |||| ||||||||| | || ||| Sbjct 2192 GATTGCTTTGGTGCAGAATTCGATGCTTTATATGAGCGTTACGAAAAAGAAGGACGTGCC 2133 Query 94432 AGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACG 94491 | || || | || |||| ||| | || |||| |||| | || || Sbjct 2132 CGTAAAACCATTAAAGCACAAGAGCTTTGGTTTGCCATTCTGGATTCACAGATTGAAACC 2073 Query 94492 GGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTC 94551 || || || || | |||| || || | | ||| ||| ||||||||||| | | Sbjct 2072 GGAACCCCTTATCTGTTGTATAAAGATGCAGCAAACAGCAAATCCAACCAGCAAAATTTA 2013 Query 94552 GGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAG 94611 || ||||| || || || || || || || ||| | ||||||||||| |||||| Sbjct 2012 GGAACCATCAAAAGTTCCAACCTTTGTACAGAAATTATAGAGTATACTTCCAAAGACGAG 1953 Query 94612 ATTGCTGTGTGTAACCTGGGCTC 94634 ||||||| |||||||||| ||| Sbjct 1952 GTTGCTGTATGTAACCTGGCCTC 1930 >seq332 Length=17232 Score = 104 bits (114), Expect = 2e-17 Identities = 317/486 (65%), Gaps = 8/486 (2%) Strand=Plus/Plus Query 93892 GCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTG 93951 || || || || || ||||| || || || || || || |||||||| |||||| || Sbjct 4547 GCTACTCCTACACTTTTCAATGCTGGTACTCCTTATCCTCAAATGTCTTCTTGTTTCTTG 4606 Query 93952 ATGACGAAC-AAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGAC 94010 | || || |||| || ||| ||||||| ||| | ||| || | ||| Sbjct 4607 GT-ACAAATGAAGGATGATAGTATCGAGGGAATTTACGATACCCTAAAACAAACTGCCTT 4665 Query 94011 CATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTC 94070 || ||||| | || || || || || || ||| ||| | | ||||| || Sbjct 4666 AATTTCAAAGTCTGCTGGTGGTATTGGTATTGCTGTTCACAAGATTCGTGCTGCTCGTAG 4725 Query 94071 CTACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAA 94130 || || || ||||||||||| || ||||| || | || || ||||| || ||||| || Sbjct 4726 TTATATTCGTGGTACCAATGGAACTTCCAATGGATTGGTTCCAATGCTTCGTGTCTTTAA 4785 Query 94131 CAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTA 94190 | | || || || || || || ||||| || | ||| || ||| |||| || || || Sbjct 4786 TGATACCGCTCGTTATGTAGATCAAGGTGGAGGCAAGAGAAAAGGTGCTTTTGCCGTTTA 4845 Query 94191 TCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAA 94250 | | || || ||||| || || | | || | || || |||||| ||||| || Sbjct 4846 TTTGGAACCATGGCATGCAGATATTTTTGAATTTTTGGATTTGAAAAAGAATCACGGAAA 4905 Query 94251 CGATCTGGAGA---GGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTAT 94307 || || | | || | || || ||||| || |||||||| | || || ||||| Sbjct 4906 GGA---AGAAATTCGTGCTCGTGATCTTTTCTATGCCCTCTGGGTTTCCGATCTCTTTAT 4962 Query 94308 GAAACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACT 94367 | |||| || || | || ||| ||| | ||||||||||||||| || ||||| Sbjct 4963 GGAACGTGTTGAAACCAATGCCGATTGGTCATTGTTTTGTCCCAATGAAGCACCAGGACT 5022 Query 94368 GTCCGA 94373 |||| Sbjct 5023 CGCCGA 5028 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494675125273040