Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_011216.1 Length=37635 Score E Sequences producing significant alignments: (Bits) Value seq3067 91.5 4e-14 seq6182 86.0 2e-12 >seq3067 Length=6736 Score = 91.5 bits (100), Expect = 4e-14 Identities = 220/330 (67%), Gaps = 10/330 (3%) Strand=Plus/Minus Query 14670 GGAAAACATGTCGTTCGACGAGCGCCTGCAGGCGGCGAAGACCCTCATCGACGAGTGCAT 14729 ||||| ||| | |||||||| ||||| ||||| ||| | | | || ||||| ||| | Sbjct 4492 GGAAAGCATCGCTTTCGACGAACGCCTCCAGGCTGCGCGGGCATTGATTGACGAATGCCT 4433 Query 14730 CAACGAATGGGCG--CGCGGCAGCGATCCGAAGATCCAGGT---GCTGGTTCAGCAGGCG 14784 || ||| | || |||| || |||||| ||| |||||| | | || Sbjct 4432 GCGGGACTGGACCACCGGGGCA-CGCCCCGAAGT----GGTCACGCTGGTAAATGATGCC 4378 Query 14785 TTCGAGACGGACAAGGAAGGCAAGATCAACGTCGGCCGCGTACTTGCGCTGCGCCGCTTG 14844 ||| ||| ||| | ||||| | ||| | | |||||| || ||| ||||||| || Sbjct 4377 TTCCGGACTGACCAAAAAGGCGACATCCGCACAGCCCGCGTCCTGGCGTTGCGCCGTATG 4318 Query 14845 GAGATCACGGACGACAAGTGGCAACGCGCCATGCAGGCGATCGGCGAGTCGGTGCAGGTC 14904 || || || || || ||||| ||||||||||| || |||||||| | ||||| Sbjct 4317 GAAATTACCGATGAACGCTGGCAGCGCGCCATGCAAGCCATCGGCGACGCCTGCCAGGTG 4258 Query 14905 GTCGGCACGAAGACGTATATGCGCTTCTACGAGCGCGTCGAGGGCAGCGAACAATACACG 14964 || ||| | ||| | || || ||| | || |||| || | | | ||| || ||| | Sbjct 4257 GTTGGCTCCAAGTCCTACATCCGCGTGTATCAGCGTGTTGGTGATACCGACCAGTACGAG 4198 Query 14965 CCGATCAGCCTCGACTTCGCGTCGCTGTGA 14994 || |||||||| || | ||| | ||||| Sbjct 4197 CCCATCAGCCTTGATATTGCGGGGGTGTGA 4168 >seq6182 Length=1162 Score = 86.0 bits (94), Expect = 2e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 6824 GCTGTCGACGGCATGAACTGCGCCAAGCCTTCCGCACCTACCGGGCTCTTTGCGTTGGCC 6883 || ||||| ||||| | ||| ||||||||| |||||| ||||| || |||| | | Sbjct 392 GCGGTCGAGGGCATCACCTGGCCCAAGCCTTGCGCACCGACCGGCGATTTCGCGTCGAAC 333 Query 6884 CGCCAGCGGCTTTCCTGATGGATCTGTCCGGCGAACGTTGCGACCGGCGCTTCGAGCCCC 6943 ||||||||||||||| ||||||||| ||||||| || | | ||| || || | ||| Sbjct 332 TTCCAGCGGCTTTCCTGGTGGATCTGTGCGGCGAAGGTGGACAACGGAGCATCCAAGCCC 273 Query 6944 CA 6945 || Sbjct 272 CA 271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 120299293395036