Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_011373.1 Length=46872 Score E Sequences producing significant alignments: (Bits) Value seq6106 113 1e-20 seq5843 80.6 8e-11 >seq6106 Length=814 Score = 113 bits (124), Expect = 1e-20 Identities = 294/448 (66%), Gaps = 9/448 (2%) Strand=Plus/Plus Query 43281 GGCGCGGAAGGCTATCGCAGACCGGGAGCGGAGGGAGATCAGGGTTCGGAAGGAGCGGCT 43340 |||||| ||||| | || ||| ||||| ||||||| ||| || |||||| ||| Sbjct 199 GGCGCGCAAGGCCCTGGCCGACATCGAGCGCGCCGAGATCAAGGTCCGCAAGGAGAAGCT 258 Query 43341 GAAGAGCAGGGCGGATCACCTGCGCGAGG-CTCA-AGCTG-CGTTCAACGAGTTCATTCG 43397 ||||| ||||||||||||||| | ||| | || ||| | | || || | | |||| Sbjct 259 GAAGAACAGGGCGGATCACCT---CAAGGACACACAGCAGGCATTTAATGCCTGGGTTCG 315 Query 43398 CCTGCGCGACGCCGACCAGCCGTGCATCAGTTGTGGACGCCACCACGACGGGCAGTNNNN 43457 | || || || | | ||| ||| |||| || || ||||| || | || || | Sbjct 316 CGCCCGTGATGCGGCACTGCCATGCGTCAGCTGCGGCCGCCATCATGGGGGTCAATACCA 375 Query 43458 NNNNNNNNNNNNNNNNACGGTTGCCGCCAGCCCAGAGCTTCGCTTCGAGCCGCTCAACGT 43517 || || | || | ||||||||| | || |||||||| |||| Sbjct 376 CGCCGGCCACTACCGCACTGTAGGAGCGAACCCAGAGCTGAGGTTTGAGCCGCTGAACGC 435 Query 43518 GAACAAACAATGCGCCCCATGCAACAACCACAAGTCAGGGGACATCGTGAACTACCGGAT 43577 || || |||||||| |||||||||||| ||||| || || | || ||||| || Sbjct 436 CTGGAAGCAGTGCGCCCCGTGCAACAACCACCTTTCAGGAAACCTCATCAATTACCGAAT 495 Query 43578 CAACCTGGTGCGCAAGATCGGCGCAGAGAACGTGGAGTGGCTGGAAGGCCCTCATGAGCC 43637 | || | | | ||||||| || || |||| ||||| ||||||||||||||| | Sbjct 496 CTCGCTCCTACAGAGAATCGGCGAGGAAAAAGTGGCATGGCTTGAAGGCCCTCATGAGGC 555 Query 43638 CCTGAAACTGACCATCGACGAAATCAAAGCGCTGAAGGCCAAGTTCCGGGCCTGGGTGCG 43697 | ||| ||| | || || | || ||| ||| ||| | | |||||| | Sbjct 556 CAAGAAGTACACCGTGGATGAGTTGAAGGCGATGACCGCCGACTACCGGGCAAAGACAAA 615 Query 43698 AGAACTGAAG-AGGGCAACG--GCATGA 43722 |||||||||| |||| | || |||||| Sbjct 616 AGAACTGAAGAAGGGGATCGCAGCATGA 643 >seq5843 Length=762 Score = 80.6 bits (88), Expect = 8e-11 Identities = 122/170 (72%), Gaps = 9/170 (5%) Strand=Plus/Plus Query 23884 GGGAGGCGAACTGTACGCGGGTTGGCCGACCGGGGGTAAGGCTCCCGGCACACCCGAAGG 23943 ||| ||||| |||||||| |||||| ||||| ||| | ||||||| || | Sbjct 9 GGGTGGCGAGCTGTACGCAGGTTGGTCGACCAGGGAATGGAAACCCGGCAGGGCCAGGGC 68 Query 23944 TGTCCCACGCACAGCCCGCCATAAAGCGAGGGCACaaaaaaaCGCC-CT---GCGGCGCT 23999 ||||||||||||| |||||||| |||| ||| | || ||| || ||||| || Sbjct 69 CCTCCCACGCACAGCTCGCCATAATGCGA----ACACGATAATGCCGCTTGCGCGGCACT 124 Query 24000 GTGCGCCTTACCGATTCGGGCGGCCAAGCCCGACCGCTGAATTTGCAGCG 24049 ||||||| | | | |||||| |||| ||||| ||||| || |||||| Sbjct 125 GTGCGCCATTCTAACCCGGGCGACCAAACCCGATCGCTG-ATGAGCAGCG 173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 149854964674392