Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq322 156 3e-33 seq982 136 3e-27 seq540 132 3e-26 >seq322 Length=112280 Score = 156 bits (172), Expect = 3e-33 Identities = 160/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 ||||||||||||||||| |||||||| |||||||| || |||| | | | |||||| Sbjct 11213 ACTAAATGAAGGGTAGATTCTTTTTGGATGTTGTAGTCAGAGAGAGTACGACCATCTTCT 11154 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 |||||||| ||||| | || | | ||||||||| ||| || ||||| ||||| Sbjct 11153 AATTGTTTACCAGCAAAAATAAGTCTTTGTTGGTCGGGTGGGATACCTTCTTTGTCTTGG 11094 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 |||||| | || ||| |||| || ||||| | ||| || ||||||||||| |||||| Sbjct 11093 ATTTTGGTCTTGACATTTTCAATGGTATCAGAACCTTCAACTTCTAAGGTAATAGTTTTA 11034 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || |||| || |||||||| |||||||| Sbjct 11033 CCGGTCAAGGTCTTTACAAAGATTTGCAT 11005 Score = 154 bits (170), Expect = 1e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| | ||| | ||||||||| || ||||| |||||||| |||||||| || | Sbjct 11687 CCACCTCTAAGTCTGAGAACTAAATGGAGAGTAGATTCTTTTTGGATGTTGTAGTCAGAG 11628 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | | |||||||||||||||| ||||| | || | | ||||||||| ||| Sbjct 11627 AGGGTACGACCGTCTTCTAATTGTTTACCAGCAAAAATGAGTCTTTGTTGGTCGGGTGGG 11568 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||| ||||| || ||| | |||||| | || || ||||| | ||| || Sbjct 11567 ATACCTTCTTTGTCTTGGATCTTGGTCTTTACATTCTCAATGGTATCAGAACCTTCAACT 11508 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 ||||||||||| |||||||| |||| || |||||||| ||||||||| Sbjct 11507 TCTAAGGTAATAGTTTTACCGGTCAAGGTCTTTACAAAGATTTGCATA 11460 Score = 136 bits (150), Expect = 3e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| ||||| | || ||||| || || || |||||||| |||||||| || | Sbjct 11915 CCACCTCTTAATCTAAGTACCAAATGGAGTGTTGATTCTTTTTGGATGTTGTAGTCAGAG 11856 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| | | | |||||||||||||| ||||| | || | | ||||| ||| ||| Sbjct 11855 AGAGTACGACCATCTTCTAATTGTTTACCAGCAAAAATGAGTCTTTGTTGATCGGGTGGG 11796 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||| ||||| |||||| | || || |||| || ||||| | |||||| Sbjct 11795 ATACCTTCTTTGTCTTGGATTTTGGTCTTGACGTTTTCAATGGTATCAGAACCTTCTACT 11736 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || ||||| || |||||||| |||| || |||||||| ||||||||| Sbjct 11735 TCCAAGGTGATTGTTTTACCGGTCAAGGTCTTTACAAAGATTTGCATA 11688 Score = 132 bits (146), Expect = 3e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | ||| | |||||||| || || || |||||||| |||||||| ||| Sbjct 11459 CCACCACGGAGTCTGAGGACTAAATGGAGAGTTGATTCTTTTTGGATGTTGTAGTCGGAT 11400 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | | | | ||||| |||||||| ||||| | || | | ||||| ||| ||| Sbjct 11399 AAAGTACGACCATCTTCCAATTGTTTACCAGCAAAAATAAGTCTTTGTTGATCGGGTGGG 11340 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||| ||||| |||||| |||| || |||| || || || | ||| || Sbjct 11339 ATACCTTCTTTGTCTTGGATTTTGGTTTTAACGTTTTCGATGGTGTCAGAACCTTCAACT 11280 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 ||||||||||| |||||||| |||| || || ||||||||||||||| Sbjct 11279 TCTAAGGTAATAGTTTTACCGGTCAAGGTCTTGACAAAAATTTGCATA 11232 Score = 118 bits (130), Expect = 8e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| | ||| | |||||||| || || || |||||||| |||||||| || | Sbjct 12143 CCACCTCTAAGTCTGAGGACTAAATGGAGAGTTGATTCTTTTTGGATGTTGTAGTCAGAG 12084 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | | | ||||| ||||| || ||||| | || | | ||||| ||| ||| Sbjct 12083 AGGGTACGACCATCTTCCAATTGCTTACCAGCAAAAATAAGTCTTTGTTGATCGGGTGGG 12024 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || |||||||| || || ||| | || ||| |||| || || || ||| || Sbjct 12023 ATACCTTCCTTATCTTGGATCTTGGTCTTGACATTTTCAATGGTGTCAGAGCCTTCAACT 11964 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 ||||||||||| |||||||| |||| || || ||||||||||||||| Sbjct 11963 TCTAAGGTAATAGTTTTACCGGTCAAGGTCTTGACAAAAATTTGCATA 11916 >seq982 Length=41121 Score = 136 bits (150), Expect = 3e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| | ||| | |||||||| || ||||| |||||||| ||||||||||| | Sbjct 1912 CCACCTCTAAGTCTGAGGACTAAATGGAGAGTAGATTCTTTTTGGATGTTGTAATCAGAG 1971 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | | | ||||| |||||||| |||||| | || | | ||||| ||| ||| Sbjct 1972 AGGGTACGACCATCTTCCAATTGTTTACCAGCGAAAATAAGTCTTTGTTGATCGGGTGGG 2031 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||| ||||| || ||| | || || |||| || || || | |||||| Sbjct 2032 ATACCTTCTTTGTCTTGGATCTTGGTCTTGACGTTTTCAATGGTGTCTGAACCTTCTACC 2091 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 |||||||| || |||||||| |||| || || ||||||||||||||| Sbjct 2092 TCTAAGGTGATAGTTTTACCGGTCAAGGTCTTGACAAAAATTTGCATA 2139 Score = 131 bits (144), Expect = 1e-25 Identities = 173/239 (72%), Gaps = 1/239 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| | ||| | |||||||| || || || |||||||| |||||||| ||| Sbjct 2596 CCACCTCTAAGTCTGAGGACTAAATGGAGAGTTGATTCTTTTTGGATGTTGTAGTCGGAT 2655 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | | | | |||||||||||||| || ||| | || | | ||||| || ||| Sbjct 2656 AAAGTACGACCATCTTCTAATTGTTTACCGGCGAAAATAAGTCTTTGTTGATCAGGTGGG 2715 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||| ||||| ||| ||| | || ||| |||| || || || | ||| || Sbjct 2716 ATACCTTCTTTGTCTTGAATCTTGGTCTTGACATTTTCAATGGTGTCAGAACCTTCAACT 2775 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAATAAA 15188 || ||||| || |||||||| |||| || ||||||||||||||||| ||| || |||| Sbjct 2776 TCCAAGGTGATTGTTTTACCGGTCAAGGTCTTTACAAAAATTTGCATGTTT-AATTAAA 2833 Score = 118 bits (130), Expect = 8e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | ||| | || ||||| ||||| || || ||||| |||||||| ||| Sbjct 2368 CCACCACGGAGTCTAAGTACCAAATGGAGGGTTGATTCCTTTTGAATGTTGTAGTCGGAT 2427 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | | | | ||||| |||||||| |||||| | || | | ||||| ||| ||| Sbjct 2428 AAAGTACGACCATCTTCCAATTGTTTACCAGCGAAAATAAGTCTTTGTTGATCGGGTGGG 2487 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||| ||||| || ||| | || ||| |||| || || || | ||| || Sbjct 2488 ATACCTTCTTTGTCTTGGATCTTGGTCTTGACATTTTCAATGGTGTCAGAACCTTCAACT 2547 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || ||||| || |||||||| |||| || || ||||||||||||||| Sbjct 2548 TCCAAGGTGATAGTTTTACCGGTCAAGGTCTTGACAAAAATTTGCATA 2595 >seq540 Length=89862 Score = 132 bits (146), Expect = 3e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| ||||| | ||| | ||| ||||| || |||||||| ||||||||||| | Sbjct 84541 CCACCTCTTAATCTAAGAACGAGATGGAGGGTTGATTCTTTTTGGATGTTGTAATCAGAG 84482 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | | | ||||| |||||||| || || | || | | ||||| ||| ||| Sbjct 84481 AGGGTACGACCATCTTCCAATTGTTTACCGGCAAAAATAAGTCTTTGTTGATCGGGTGGG 84422 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||| || || |||||| | || ||| |||| || || || | ||| || Sbjct 84421 ATACCTTCTTTATCTTGGATTTTGGTCTTGACATTTTCAATGGTGTCAGAACCTTCAACT 84362 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 ||||| || ||||||||||| |||| ||||| ||||||||||||||| Sbjct 84361 TCTAATGTGATGGTTTTACCGGTCAAGGTTTTAACAAAAATTTGCATA 84314 Score = 123 bits (136), Expect = 2e-23 Identities = 172/241 (71%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| ||||| | || ||||| ||||| || || ||||| ||||| ||||| | Sbjct 83857 CCACCTCTTAATCTAAGTACCAAATGGAGGGTTGATTCCTTTTGGATGTTATAATCAGAG 83798 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | | | ||||| |||||||| || || | || | | ||||||||| ||| Sbjct 83797 AGGGTACGACCATCTTCCAATTGTTTACCGGCAAAGATTAGTCTTTGTTGGTCGGGTGGG 83738 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||| || || |||||| | || ||| |||| || || || | ||| || Sbjct 83737 ATACCTTCTTTATCTTGGATTTTGGTCTTGACATTTTCAATGGTGTCAGAACCTTCAACT 83678 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAATAAAT 15189 ||||| || || ||||| || || | ||| ||||||||||||||||| || ||||| || Sbjct 83677 TCTAATGTGATAGTTTTTCCGGTTAAAGTCTTTACAAAAATTTGCATTTTAAAAATATAT 83618 Query 15190 T 15190 | Sbjct 83617 T 83617 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| | ||| | |||||||||||||| || |||||||| ||||| ||||| | Sbjct 84085 CCACCTCTAAGTCTGAGGACTAAATGAAGGGTTGATTCTTTTTGGATGTTATAATCAGAG 84026 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | | | ||||| |||||||| || || | || | | ||||| ||| ||| Sbjct 84025 AGGGTACGACCATCTTCCAATTGTTTACCGGCAAAAATAAGTCTTTGTTGATCGGGTGGG 83966 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||| || || || ||| | || || |||| || || || || || Sbjct 83965 ATACCTTCTTTATCTTGGATCTTGGTCTTGACGTTTTCAATGGTGTCAGAGCCCTCAACT 83906 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 ||||| || || |||||||| |||| ||||| ||||||||||||||| Sbjct 83905 TCTAATGTGATTGTTTTACCGGTCAAGGTTTTAACAAAAATTTGCATA 83858 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357358138671590