Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq982 95.1 1e-14 seq540 89.7 5e-13 >seq982 Length=41121 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 || ||||| | || || |||||||| || ||||| ||| | || ||| ||| ||| Sbjct 2614 ACTAAATGGAGAGTTGATTCTTTTTGGATGTTGTAGTCGGATAAAGTACGACCATCTTCT 2673 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 | ||||| || ||| | || | || || ||||| || || || || || ||||| Sbjct 2674 AATTGTTTACCGGCGAAAATAAGTCTTTGTTGATCAGGTGGGATACCTTCTTTGTCTTGA 2733 Query 127025 ATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTG 127084 || || ||||| | ||| | |||||| | || || ||||| | ||| | ||||| Sbjct 2734 ATCTTGGTCTTGACATTTTCAATGGTGTCAGAACCTTCAACTTCCAAGGTGATTGTTTTA 2793 Query 127085 CCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 ||||||| || ||||||||||| |||||| Sbjct 2794 CCGGTCAAGGTCTTTACAAAAATTTGCATG 2823 >seq540 Length=89862 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| | ||||| | |||||||| | || || || ||||| || || ||||| Sbjct 83857 CCACCTCTTAATCTAAGTACCAAATGGAGGGTTGATTCCTTTTGGATGTTATAATCAGAG 83798 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| ||| || | ||||| || || |||| | || || || ||||| || Sbjct 83797 AGGGTACGACCATCTTCCAATTGTTTACCGGCAAAGATTAGTCTTTGTTGGTCGGGTGGG 83738 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || || || || || |||||| ||||| | ||| | |||||| | || || ||| Sbjct 83737 ATACCTTCTTTATCTTGGATTTTGGTCTTGACATTTTCAATGGTGTCAGAACCTTCAACT 83678 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | ||||| ||||| | ||| ||||||||||| ||||| Sbjct 83677 TCTAATGTGATAGTTTTTCCGGTTAAAGTCTTTACAAAAATTTGCAT 83631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475454593209760