Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_011802.1 Length=41941 Score E Sequences producing significant alignments: (Bits) Value seq3699 796 0.0 seq1335 605 8e-169 seq2982 86.0 2e-12 >seq3699 Length=658 Score = 796 bits (882), Expect = 0.0 Identities = 549/621 (88%), Gaps = 0/621 (0%) Strand=Plus/Plus Query 21711 CATATAAGGACGTAGTCGGTGTGTTGACTGTGTGTTATGGCCACACCGGAAAAGACATCA 21770 |||| || || | || ||||| | |||||| ||| | || || || ||||||||||||| Sbjct 1 CATACAAAGATATTGTTGGTGTATGGACTGTATGTCACGGGCATACAGGAAAAGACATCA 60 Query 21771 TGCCTGGTAAAACGTATACCGAAGCAGAATGCAAAGCCCTCCTGAATAAAGACCTTATCA 21830 ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| || Sbjct 61 TGCTCGGTAAAACGTATACCAAAGCAGAATGCAAAGCCCTCCTGAATAAAGACCTTGCCA 120 Query 21831 CTGTCGCCAGACAAATTAACCCGTACATCAAAGTAGATATACCGGAAACAACGCGCGGCG 21890 | |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct 121 CGGTCGCCAGACAAATTAACCCGTACATAAAAGTTGATATACCGGAAACAACGCGCGGCG 180 Query 21891 CTCTTTACTCGTTCGTTTACAATGTGGGCGCAGGCAATTTCAGAACATCGACGCTTCTTC 21950 |||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| Sbjct 181 CTCTTTACTCGTTCGTTTACAACGTGGGCGCTGGCAATTTCAGAACATCGACGCTTCTTC 240 Query 21951 GCAAAATCAATCAGGGTGATATCAAAGGTGCATGTGATCAGCTACGTCGCTGGACATACG 22010 ||||||| || ||||| ||||||||||| ||||||||||||||||||||||||||||| | Sbjct 241 GCAAAATAAACCAGGGCGATATCAAAGGCGCATGTGATCAGCTACGTCGCTGGACATATG 300 Query 22011 CTGGCGGTAAGCAATGGAAAGGCCTGATGACTCGTCGTGAGGTTGAGCGTGATGTCTGTT 22070 |||||||||||||||||||||| || ||||||||||||||| |||||||||| |||||| Sbjct 301 CTGGCGGTAAGCAATGGAAAGGTCTCATGACTCGTCGTGAGATTGAGCGTGAAATCTGTT 360 Query 22071 TGTGGGGTAAGCAATGAGCAGATTAACCTCGATTATCTCCGCTCTGGTTATCTGCATCAT 22130 |||||||| |||||||| |||| ||||| ||||||||||||||||||||||||||||||| Sbjct 361 TGTGGGGTCAGCAATGAACAGAGTAACCGCGATTATCTCCGCTCTGGTTATCTGCATCAT 420 Query 22131 CGTCTGCCTGTCATGGGCTGTTAATCATTATCGTGATAACGCCATCACCTACAAAGTCCA 22190 |||||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||| Sbjct 421 CGTCTGCCTGTCATGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGCCCA 480 Query 22191 GCGCGACACTGTTACTCAAAAGCTGGCGCTGGCGAACGCGACAATTACCGATATGCAAAC 22250 |||||||| | | | | ||| ||||||||||||| ||||||| || ||||| | Sbjct 481 GCGCGACAAAAATGCCAGAGAACTGAAGCTGGCGAACGCGGCAATTACTGACATGCAGAT 540 Query 22251 GCGCCAGCGTGATGTAGCAGAACTTGACGCCAGATACACAAAGGAGCTTGCTGATGCGAA 22310 ||||||||||||||| || | ||| || | | |||||| |||||| | ||| ||||||| Sbjct 541 GCGCCAGCGTGATGTTGCTGCACTGGATGAAAAATACACGAAGGAGTTAGCTAATGCGAA 600 Query 22311 AGCTGAGAATGATGCTCTTCG 22331 |||||| ||||||||||| || Sbjct 601 AGCTGAAAATGATGCTCTGCG 621 >seq1335 Length=14169 Score = 605 bits (670), Expect = 8e-169 Identities = 757/1028 (74%), Gaps = 10/1028 (1%) Strand=Plus/Minus Query 13000 CATCACCCGAATATCTCATCAGGCCATTAGCTGGCTAACCGTGCTTCCTATAGGTCTGCG 13059 ||| |||| || |||||||| | ||||| || ||||| |||||||| ||||||| Sbjct 5853 CATTACCCAAAAGCCTCATCAGCACGC-AGCTGATTATCCGTGTTTCCTATACGTCTGCG 5795 Query 13060 GCATGCTTCCAATCACCTTTCCAAAGACAAAAACCCTATTCATTTCATCTCTTTCAATTG 13119 |||| || ||||| ||||| || || | || |||| ||||| || ||| | || || | Sbjct 5794 GCATACTGCCAATAACCTTCCCGAAAATGAACACCCGGTTCATCTCGTCTTTCTCGATCG 5735 Query 13120 GGTCCCAAGCTGAATAACTCTTATTATCAGATATGACCAATAGTTTATCTTTCATCTTCT 13179 ||||||| | ||| || ||||| |||||||| || |||| ||| |||||||||||| | | Sbjct 5734 GGTCCCACGGTGAGTAGCTCTTGTTATCAGAGATAACCAGTAGCTTATCTTTCATCATTT 5675 Query 13180 GGAGCCGCTTAACATGTGCGGTATCGTCATAGAGGAAGGCGTATATCCCATCCCCATCGA 13239 | || ||||| ||||| || || ||||| || || || || || || ||||| || |||| Sbjct 5674 GCAGGCGCTTTACATGGGCTGTGTCGTCGTACAGAAACGCATAGATACCATCACCGTCGA 5615 Query 13240 AGTTTTTGATGCTTACGTCTACAAACAACAAATCTCCTGGTTCAATAGTTCCTGACATGC 13299 | ||| | | | || || |||| || ||| |||||||| || ||||||||||||| Sbjct 5614 AAGATTTAACCGTGATATCAACGAACAGCAGATCACCTGGTTCGATCGTTCCTGACATGC 5555 Query 13300 TATCCCCACGCACATTTATGATGCGGATATTTTCAGCCTTTCTACCATCAAACATGTGTC 13359 | || || ||||| || ||||||||||||||||| ||||| || ||||| |||||||| | Sbjct 5554 TGTCACCGCGCACGTTAATGATGCGGATATTTTCCGCCTTCCTGCCATCGAACATGTGAC 5495 Query 13360 TGGCATCGTCCTGCGAATACTCAACCGAGCGGAGTATTTCCACGAATTCTCGATTGATAA 13419 |||||||| ||| |||||||||||||| || | |||||| || || || ||||| | Sbjct 5494 GAGCATCGTCAAACGAGTACTCAACCGAGCGTAGAACTTCCACAAACTCACGGTTGATGA 5435 Query 13420 CGCCAGGACCCGCGCTTACTTCAAGATCTAGGATATCGAT-TTTAAATGTGTTTGATGAT 13478 | || || || || || ||||| | ||| || | || || || || | | || ||| Sbjct 5434 CACCCGGTCCGGCACTGACTTCTATATCAAGAACGTCAATCTTGAAGTATTTTGAATGGC 5375 Query 13479 GGAGATGC--GTTTATCGGAGTAGTT--CCATCTTTTTTCATAGGACCAATTCCGGTAGA 13534 || | || | || | || | ||| || || ||| |||| || || || || | || Sbjct 5374 TGACA-GCAGGCTTCCCTGA-TTGTTGACCGTCATTTCTCATCGGGCCTATGCCTGATGA 5317 Query 13535 CAACCATTCCGAACTAACACCTAACGCGTTTGCTATTTCAACAATCTTTGTTGACCCACG 13594 | |||||| | | |||||| || || || |||||||||||||| |||||||| || || Sbjct 5316 GAGCCATTCTGTTCGAACACCCAATGCATTAGCTATTTCAACAATTTTTGTTGAGCCGCG 5257 Query 13595 AGCGTTTCCACTTGTCAAACGCCAGATCGTTGGCTGAGCAACGCCTGACGCTTTAGCAAG 13654 ||||| || ||||||| | |||||| || || ||||| ||||| ||||| || ||||| Sbjct 5256 CGCGTTGCCGCTTGTCAGTCTCCAGATTGTGGGTTGAGCTACGCCAGACGCCTTTGCAAG 5197 Query 13655 AGCACCTTGAGACATACCAGCTAGTTCCATTGCCTTGTTGAGACGGTCAGAGAGAGTTTC 13714 ||| ||||||||||| |||| | ||||||| || ||| | || |||| |||||||| Sbjct 5196 AGCGCCTTGAGACATTCCAGATTGTTCCATCGCTAGGTTTAAGCGATCAGCAAGAGTTTC 5137 Query 13715 TTTTTTCATAATATTCAATTTATACGCTTGCGTATTAATGGTCAAAACACGTTTTGCTAT 13774 ||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||| Sbjct 5136 TTTTTTCATAAGTTTTAATTTATACGCTTGCGTATTGATGGTCAAAACACGTTTTGCTAT 5077 Query 13775 TGCTTTGATTAATACTCATTGCTATTATTTGTTGTGTGTTATACGAAAGGGAATAAGCAA 13834 ||||| | ||||||| ||||||||||||| || || |||| || ||||| || Sbjct 5076 TGCTTGGGTTAATACGCATTGCTATTATTCATTCATTGCAATACCAATAGGAATTGATAA 5017 Query 13835 TGACTAACAAAGCAATACAAAAAGCTGTTGCCATTGCAGGAAGCCAGCAAAAACTCGCCT 13894 |||| || || | || ||| || | ||| |||| || || || ||| || Sbjct 5016 TGACAAATCAAACCATTCAACTCGCAATCAGTATTACAGGTAGTCAAAAACGACTGGCAG 4957 Query 13895 CTTTGTGTGGAGTTAAGCAGCCAACTGTATGGCGTTGGTTACATGGTGGCGGCATTGACG 13954 | | || || || || || || || ||||||||| |||| |||||||| ||||| | Sbjct 4956 ATCTATGCGGTGTAGCCCAACCCACAGTTTGGCGTTGGCTACACGGTGGCGGAATTGATG 4897 Query 13955 CTAAGTATGTGGCAGCAATCGTAAAAGCTACAGGAGGAAGAATTAAAGCCAG-AGAACTT 14013 | ||||| ||| || ||| || || |||| |||||| |||| ||| || Sbjct 4896 CCCGCTATGTAATGAAAATTGTCTCAGCCACTGGTGGAAAGATTAAA-CCAGCAGATATT 4838 Query 14014 CGTCCTGA 14021 ||||| || Sbjct 4837 CGTCCCGA 4830 Score = 89.7 bits (98), Expect = 1e-13 Identities = 68/78 (87%), Gaps = 3/78 (4%) Strand=Plus/Minus Query 4624 CTCCATAAAACAAAACCCGCCGTAGCGAGTTCATATGaaaaaaaTCCCCGCGAGTGCGAG 4683 ||||||||||||||||||||||||||||||||| || ||| |||||| || |||||||| Sbjct 11219 CTCCATAAAACAAAACCCGCCGTAGCGAGTTCAGATAAAAGAAATCCTCGTCAGTGCGAG 11160 Query 4684 GTT--TGTT-ATTGCTGC 4698 | | |||| |||||||| Sbjct 11159 GATGCTGTTCATTGCTGC 11142 >seq2982 Length=1456 Score = 86.0 bits (94), Expect = 2e-12 Identities = 50/52 (96%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 3027 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCAGTTAAA 3078 |||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 86 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTTCAA 137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 134077221350964