Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq540 138 1e-27 seq322 116 3e-21 seq982 107 2e-18 seq391 100 3e-16 >seq540 Length=89862 Score = 138 bits (152), Expect = 1e-27 Identities = 153/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 45137 ATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTG 45196 ||| || ||||||||||||||||| |||||||| || ||| | ||| |||||||| Sbjct 83834 ATGGAGGGTTGATTCCTTTTGGATGTTATAATCAGAGAGGGTACGACCATCTTCCAATTG 83775 Query 45197 TTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTT 45256 ||| || || | || | || ||| ||||| || || || |||||||||||||| ||||| Sbjct 83774 TTTACCGGCAAAGATTAGTCTTTGTTGGTCGGGTGGGATACCTTCTTTATCTTGGATTTT 83715 Query 45257 TTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 |||| ||| | |||||| ||| || ||||| | || | ||||| ||||| Sbjct 83714 GGTCTTGACATTTTCAATGGTGTCAGAACCTTCAACTTCTAATGTGATAGTTTTTCCGGT 83655 Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340 || ||| ||||||||||||||||| Sbjct 83654 TAAAGTCTTTACAAAAATTTGCAT 83631 Score = 122 bits (134), Expect = 8e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || | ||| || | |||| ||| || ||||||||||||||||| |||||||| Sbjct 84316 ATACCACCTCTGAGTCTGAGAACTAAATGGAGAGTTGATTCCTTTTGGATGTTATAATCA 84257 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| ||| ||||||||||| || || | || | || ||| ||||| || Sbjct 84256 GAGAGGGTACGGCCATCTTCCAATTGTTTACCGGCAAAGATAAGTCTTTGTTGGTCGGGT 84197 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || |||||||||||||| ||||| |||| ||| | |||||| ||| || Sbjct 84196 GGGATACCTTCTTTATCTTGGATTTTGGTCTTGACATTTTCAATGGTGTCAGAACCTTCA 84137 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | || | ||||| ||||| | || || ||||| |||||||| Sbjct 84136 ACTTCTAATGTGATAGTTTTACCGGTCAAGGTCTTAACAAAGATTTGCAT 84087 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 |||| ||| || |||||||| |||||||| |||||||| || ||| | ||| ||| Sbjct 84067 ACTAAATGAAGGGTTGATTCTTTTTGGATGTTATAATCAGAGAGGGTACGACCATCTTCC 84008 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 |||||||| || || | || | || ||| || || || || || |||||||||||||| Sbjct 84007 AATTGTTTACCGGCAAAAATAAGTCTTTGTTGATCGGGTGGGATACCTTCTTTATCTTGG 83948 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 || || |||| ||| | |||||| || ||| ||||| | || | ||||| Sbjct 83947 ATCTTGGTCTTGACGTTTTCAATGGTGTCAGAGCCCTCAACTTCTAATGTGATTGTTTTA 83888 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | ||||| |||||||||||||| Sbjct 83887 CCGGTCAAGGTTTTAACAAAAATTTGCAT 83859 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || ||||| || |||||||| |||||||| || ||||| || ||| | ||| ||| Sbjct 84523 ACGAGATGGAGGGTTGATTCTTTTTGGATGTTGTAATCAGAGAGGGTACGACCATCTTCC 84464 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 |||||||| || || | || | || ||| || || || || || |||||||||||||| Sbjct 84463 AATTGTTTACCGGCAAAAATAAGTCTTTGTTGATCGGGTGGGATACCTTCTTTATCTTGG 84404 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 ||||| |||| ||| | |||||| ||| || ||||| | || | ||||| Sbjct 84403 ATTTTGGTCTTGACATTTTCAATGGTGTCAGAACCTTCAACTTCTAATGTGATGGTTTTA 84344 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | ||||| |||||||||||||| Sbjct 84343 CCGGTCAAGGTTTTAACAAAAATTTGCAT 84315 >seq322 Length=112280 Score = 116 bits (128), Expect = 3e-21 Identities = 166/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| || | |||| ||| || |||||||| |||||||| || || ||| Sbjct 11462 ATACCACCACGGAGTCTGAGGACTAAATGGAGAGTTGATTCTTTTTGGATGTTGTAGTCG 11403 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || | ||| ||||||||||| || || | || | || ||| || || || Sbjct 11402 GATAAAGTACGACCATCTTCCAATTGTTTACCAGCAAAAATAAGTCTTTGTTGATCGGGT 11343 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTT-CTACGGTGTCGGAAGACTC 45289 || || |||||||| ||||| ||||| |||| | || || | | |||||| ||| || Sbjct 11342 GGGATACCTTCTTTGTCTTGGATTTTG-GTTTTAACGTTTTCGATGGTGTCAGAACCTTC 11284 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | |||| ||||| ||||| | || || |||||||||||||| Sbjct 11283 AACTTCTAAGGTAATAGTTTTACCGGTCAAGGTCTTGACAAAAATTTGCAT 11233 Score = 105 bits (116), Expect = 6e-18 Identities = 168/240 (70%), Gaps = 1/240 (0%) Strand=Plus/Minus Query 45102 TTTTATTTTATT-CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGAT 45160 |||||||| ||| || || | || || | |||| ||| || |||||||| |||||||| Sbjct 12156 TTTTATTTAATTTCCACCTCTAAGTCTGAGGACTAAATGGAGAGTTGATTCTTTTTGGAT 12097 Query 45161 ATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTG 45220 || || || || ||| | ||| |||||||| || || || | || | || ||| Sbjct 12096 GTTGTAGTCAGAGAGGGTACGACCATCTTCCAATTGCTTACCAGCAAAAATAAGTCTTTG 12037 Query 45221 CTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTC 45280 || || || || || ||||| |||||||| || || |||| ||| | |||||| Sbjct 12036 TTGATCGGGTGGGATACCTTCCTTATCTTGGATCTTGGTCTTGACATTTTCAATGGTGTC 11977 Query 45281 GGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || ||||| | |||| ||||| ||||| | || || |||||||||||||| Sbjct 11976 AGAGCCTTCAACTTCTAAGGTAATAGTTTTACCGGTCAAGGTCTTGACAAAAATTTGCAT 11917 >seq982 Length=41121 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 45137 ATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTG 45196 ||| || ||||||||||||||||| || || ||| | || | ||| |||||||| Sbjct 2163 ATGGAGGGTTGATTCCTTTTGGATGTTGTAGTCGGATAAAGTACGACCATCTTCCAATTG 2222 Query 45197 TTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTT 45256 ||| || || | || | || ||| ||||| || || || |||||||| ||||| || || Sbjct 2223 TTTACCGGCAAAGATAAGTCTTTGTTGGTCGGGTGGGATACCTTCTTTGTCTTGGATCTT 2282 Query 45257 TTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 |||| ||| | |||||| ||| |||||||| | || | ||||| ||||| Sbjct 2283 GGTCTTGACGTTTTCGATGGTGTCAGAACCTTCGACTTCCAAGGTGATTGTTTTACCGGT 2342 Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340 | || |||||||| |||||||| Sbjct 2343 CAAGGTCTTTACAAAGATTTGCAT 2366 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 |||| ||| || |||||||| |||||||| || || ||| | || | ||| || Sbjct 2614 ACTAAATGGAGAGTTGATTCTTTTTGGATGTTGTAGTCGGATAAAGTACGACCATCTTCT 2673 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 |||||||| || ||| | || | || ||| || || || || || |||||||| |||||| Sbjct 2674 AATTGTTTACCGGCGAAAATAAGTCTTTGTTGATCAGGTGGGATACCTTCTTTGTCTTGA 2733 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 || || |||| ||| | |||||| ||| || ||||| | || | ||||| Sbjct 2734 ATCTTGGTCTTGACATTTTCAATGGTGTCAGAACCTTCAACTTCCAAGGTGATTGTTTTA 2793 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | || ||||||||||||||||| Sbjct 2794 CCGGTCAAGGTCTTTACAAAAATTTGCAT 2822 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| || | || | ||| || |||||||||||||| || || || ||| Sbjct 2365 ATACCACCACGGAGTCTAAGTACCAAATGGAGGGTTGATTCCTTTTGAATGTTGTAGTCG 2424 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || | ||| ||||||||||| || ||| | || | || ||| || || || Sbjct 2425 GATAAAGTACGACCATCTTCCAATTGTTTACCAGCGAAAATAAGTCTTTGTTGATCGGGT 2484 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || |||||||| ||||| || || |||| ||| | |||||| ||| || Sbjct 2485 GGGATACCTTCTTTGTCTTGGATCTTGGTCTTGACATTTTCAATGGTGTCAGAACCTTCA 2544 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | || | ||||| ||||| | || || |||||||||||||| Sbjct 2545 ACTTCCAAGGTGATAGTTTTACCGGTCAAGGTCTTGACAAAAATTTGCAT 2594 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 |||| ||| || || ||||| |||||||| || ||||| || ||| | ||| ||| Sbjct 1930 ACTAAATGGAGAGTAGATTCTTTTTGGATGTTGTAATCAGAGAGGGTACGACCATCTTCC 1989 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 |||||||| || ||| | || | || ||| || || || || || |||||||| ||||| Sbjct 1990 AATTGTTTACCAGCGAAAATAAGTCTTTGTTGATCGGGTGGGATACCTTCTTTGTCTTGG 2049 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 || || |||| ||| | |||||| ||| || || || | || | ||||| Sbjct 2050 ATCTTGGTCTTGACGTTTTCAATGGTGTCTGAACCTTCTACCTCTAAGGTGATAGTTTTA 2109 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | || || |||||||||||||| Sbjct 2110 CCGGTCAAGGTCTTGACAAAAATTTGCAT 2138 >seq391 Length=66319 Score = 100 bits (110), Expect = 3e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || ||||| || | |||| ||| || ||||||||||||||||| || ||||| Sbjct 37210 CCACCACGGAGTCTGAGAACTAAATGGAGGGTTGATTCCTTTTGGATGTTGTAATCTTGT 37269 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || | ||| || |||||||| || || | || | || ||| || || || || Sbjct 37270 AAAGTACGACCATCTTCTAATTGTTTACCAGCAAAGATAAGTCTTTGTTGATCGGGGGGG 37329 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 || |||||||| ||||| ||||| |||| ||| | |||||| || ||| ||| Sbjct 37330 ATACCTTCTTTGTCTTGGATTTTAGCCTTGACGTTTTCGATGGTGTCTGATCCCTCTACT 37389 Query 45294 TCGAGAGTAACCGTTTTGCC 45313 |||||||||| ||| || || Sbjct 37390 TCGAGAGTAATCGTCTTACC 37409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451959276589040