Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_013055.1 Length=39896 Score E Sequences producing significant alignments: (Bits) Value seq2461 174 4e-39 seq3418 165 2e-36 seq385 86.0 2e-12 seq6260 80.6 7e-11 >seq2461 Length=11543 Score = 174 bits (192), Expect = 4e-39 Identities = 456/683 (67%), Gaps = 22/683 (3%) Strand=Plus/Plus Query 8437 GAGTTGATTATCGTCGGCGGACGGCCGTCGATGGGAAAGACCTCCCTCGCAATGAATATC 8496 || ||||| ||||||| ||| || ||||| ||||| || ||| || |||| ||||| | Sbjct 8219 GACTTGATCATCGTCGCCGGCCGTCCGTCCATGGGTAAAACCACCTTCGCCATGAACCTG 8278 Query 8497 GCAGAGCATGTCGCCAT-CGTGTCGAGATTGCCCGTCGGCGTCTTGTCGCTGGAAATGCC 8555 | || | | || | || ||| | ||| | | || | || ||||| ||||| Sbjct 8279 GTGGAAAACGCCGTGTTGCGCAGCGACAAGGCCGTACTG-GTTTATTCCCTGGAGATGCC 8337 Query 8556 GACCGAACAGTTGACCATGCGCATGCTGGCGTCGACATCCCGTATCAGCCAAAACAGGCT 8615 |||| | ||| |||||| ||| || |||| ||| ||| ||| | || | | Sbjct 8338 AGGCGAATCGCTGATCATGCGTATGTTGTCGTCCCTGGGCCGCATCGACCAGACCAAGGT 8397 Query 8616 GCGAACCGGTCGCCTCGAGGATGACGACTGGCCGCGCCTGACGCGTGGCG-TCGAGCTGA 8674 ||| |||||||||| || || ||||| |||||||| ||||| | |||| || | ||| Sbjct 8398 GCGTGCCGGTCGCCTGGAAGACGACGATTGGCCGCGGCTGAC-CTCGGCGGTCAACCTGC 8456 Query 8675 TGGCCGACGCGCCCGTGCATATTCTCGATAGCTCCGCG---ATCACCCCGTCG-AAATTC 8730 | | ||| | | || || ||||| | ||||| |||| ||||||| |||| | Sbjct 8457 T---CAACGATCGCAAGCTGTTTATCGATGACACCGCGGGCATCAGCCCGTCGGAAATGC 8513 Query 8731 AAGTCCGAGTTGCGG-CGCTTGTATCGCGAATGCGGCCGGCTCGGGATGATTGTCGTTGA 8789 | || || | | ||| || || || |||| | | |||| | | || Sbjct 8514 GCG--CGCGTACCCGACGCCTGGTGCGTGAGCACGGCGATATTGCCCTGATCATGATCGA 8571 Query 8790 CTACCTGCAGCTGATGTCGGGTGACGG----CGGCGGATCTGAAATGCGGGCCACCGAGG 8845 |||||||||| ||||| | | | ||| | |||| ||| | ||| ||| |||| Sbjct 8572 CTACCTGCAGTTGATG-CAGATCCCGGGCTCCAGCGG---TGACAGCCGGACCAACGAGA 8627 Query 8846 TCGCCGAAATATCGCGCGCACTCAAACAAATTGCGAAGGAACTCGACGTTCCGATCATCG 8905 | |||| || || ||| | | ||| | || |||||| || || ||| | | | Sbjct 8628 TTTCCGAGATTTCCCGCTCGTTGAAAGCCCTGGCCAAGGAATTCAACTGCCCGGTGGTTG 8687 Query 8906 CGCTGTCGCAGCTTAATCGAGGGCTCGAGAATCGCCCAAACAAGCGGCCCGTCATGTCCG 8965 | ||||||||||| || ||| || ||| | || || ||||| || || ||| |||| Sbjct 8688 CCCTGTCGCAGCTCAACCGATCTCTTGAGCAGCGTCCGAACAAACGCCCGATCAACTCCG 8747 Query 8966 ATCTGCGCGAGTCGGGTGCGATCGAGCAGGATGCCGACGTGATCCTCTTTATCTACCGCG 9025 | |||| || || || ||||||||||||||||| ||||||||| | || | ||||| | Sbjct 8748 ACTTGCGGGAATCCGGAGCGATCGAGCAGGATGCTGACGTGATCATGTTCGTATACCGGG 8807 Query 9026 ATGAGGTCTATAACCCCGACAGCGCAGATCGCGGTACGGCCGAAATCATCATTGCGAAGC 9085 | ||||| ||| |||| || | || || || | || |||||||| || | || | Sbjct 8808 ACGAGGTGTATCACCCGGAGACCGAGCATAAAGGCATCGCTGAAATCATTATCGGTAAAC 8867 Query 9086 AGCGAAACGGGCCGATTGGCACC 9108 |||| |||||||| || |||||| Sbjct 8868 AGCGTAACGGGCCAATCGGCACC 8890 >seq3418 Length=564 Score = 165 bits (182), Expect = 2e-36 Identities = 184/246 (75%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 8878 GCGAAGGAACTCGACGTTCCGATCATCGCGCTGTCGCAGCTTAATCGAGGGCTCGAGAAT 8937 ||||||||| | | |||| | || || ||||| |||||||| ||| ||| ||||| Sbjct 265 GCGAAGGAAATGCAGTGTCCGGTAATTGCCCTGTCACAGCTTAACCGATCGCTGGAGAAC 324 Query 8938 CGCCCAAACAAGCGGCCCGTCATGTCCGATCTGCGCGAGTCGGGTGCGATCGAGCAGGAT 8997 || || || || || || || |||||||| |||| || || |||||||||||||||||| Sbjct 325 CGTCCGAATAAACGTCCGGTGATGTCCGACTTGCGTGAATCCGGTGCGATCGAGCAGGAT 384 Query 8998 GCCGACGTGATCCTCTTTATCTACCGCGATGAGGTCTATAACCCCGACAGCGCAGATCGC 9057 |||||| ||||| | ||||| ||||| |||||||| |||||| || ||| Sbjct 385 GCCGACTTGATCATGTTTATTTACCGGGATGAGGTTTATAACAAGGAATCTAAAGAAGCT 444 Query 9058 GGTACGGCCGAAATCATCATTGCGAAGCAGCGAAACGGGCCGATTGGCACCGTACGGCTC 9117 || || |||||||| || || | || ||||| || || || ||||| |||||||| || Sbjct 445 GGCACTGCCGAAATTATTATCGGCAAACAGCGTAATGGTCCAATTGGTACCGTACGTCTG 504 Query 9118 GCATTC 9123 |||||| Sbjct 505 GCATTC 510 >seq385 Length=624889 Score = 86.0 bits (94), Expect = 2e-12 Identities = 135/187 (72%), Gaps = 6/187 (3%) Strand=Plus/Plus Query 8846 TCGCCGAAAT-ATCGCGCGCACTCAAACAAATTGCGAAGGAACTCGACGTTCCGATCATC 8904 || ||||||| | | || || |||||| ||| ||||||||| || ||||||||| Sbjct 598982 TCACCGAAATCACCACGGGC-CTCAAAGCGCTTGGCAAGGAACTCAACACGCCGATCATC 599040 Query 8905 GCGCTGTCGCAGCTTAATCGAGGGCTCGAGAATCGCCCAAACAAGCGGCCCGTCA--TGT 8962 |||||||| ||||| || | | || | ||| | ||||||| |||| || | | Sbjct 599041 GCGCTGTCACAGCTCTCCCGTCAGGTGGAAAGCCGCGAAGACAAGCG-CCCG-CAGCTCT 599098 Query 8963 CCGATCTGCGCGAGTCGGGTGCGATCGAGCAGGATGCCGACGTGATCCTCTTTATCTACC 9022 |||| ||||| || || || ||||||||||||| ||||||||| | |||| | || | Sbjct 599099 CCGACCTGCGTGAATCCGGGTCGATCGAGCAGGACGCCGACGTGGTGATCTTCGTTTATC 599158 Query 9023 GCGATGA 9029 |||| || Sbjct 599159 GCGACGA 599165 >seq6260 Length=2033 Score = 80.6 bits (88), Expect = 7e-11 Identities = 106/147 (72%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 8900 TCATCGCGCTGTCGCAGCTTAATCGAGGGCTCGAGAATCGCCCAAACAAGCGGCCCGTCA 8959 |||||||||| |||||| | || | ||| | || || |||||||| || || | Sbjct 1675 TCATCGCGCTATCGCAGTTGTCCCGCCAGTGTGAGCAGCGGCCCAACAAGCGCCCTGTGA 1616 Query 8960 TGTCCGATCTGCGCGAGTCGGGTGCGATCGAGCAGGATGCCGACGTGATCCTCTTTATCT 9019 | || |||| ||||| || |||||||||||||| || ||| | ||| | || ||| Sbjct 1615 ACGCAGACTTGCGGGAGTCCGGCGCGATCGAGCAGGACGCGGACATCATCATGTTCGTCT 1556 Query 9020 ACCGCGATGAGGTCTATAACCCCGACA 9046 | || || |||||||| ||||| |||| Sbjct 1555 ATCGAGACGAGGTCTACAACCCGGACA 1529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127533825468504