Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_013059.1 Length=40975 Score E Sequences producing significant alignments: (Bits) Value seq3699 199 1e-46 seq1335 87.8 5e-13 >seq3699 Length=658 Score = 199 bits (220), Expect = 1e-46 Identities = 207/271 (76%), Gaps = 23/271 (8%) Strand=Plus/Plus Query 38418 ATGAGCAGAGTAACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCTGCCTGTCA 38477 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 374 ATGAACAGAGTAACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCTGCCTGTCA 433 Query 38478 TGGGCTGTTAATCATTACCGTGATAACGCCACCGCCTACAAAGAGCAGCGCGATAAA--- 38534 ||||||||||||||||||||||||||||||| ||||||||| |||||||| ||| Sbjct 434 TGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAAT 493 Query 38535 GCCACA----TCCATC--------------ATCGCTGATATGCAGAAGCGTCAACGTGAT 38576 |||| | | | | || |||| ||||||| ||| || |||||| Sbjct 494 GCCAGAGAACTGAAGCTGGCGAACGCGGCAATTACTGACATGCAGATGCGCCAGCGTGAT 553 Query 38577 GTAGCAGAACTCGACGCCAGATACACAAAGGAGCTTGCTGATGCTAACGC-GACTATCGA 38635 || || | ||| || | | |||||| |||||| | ||| |||| || || || || || Sbjct 554 GTTGCTGCACTGGATGAAAAATACACGAAGGAGTTAGCTAATGCGAAAGCTGAAAAT-GA 612 Query 38636 AAGTCTCCGTGCTGATGTTTCTGCTGGTCGT 38666 ||| |||| || |||| | ||||||||| Sbjct 613 TGCTCTGCGTGATGGTGTTGCCGCTGGTCGT 643 >seq1335 Length=14169 Score = 87.8 bits (96), Expect = 5e-13 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 21092 CATTTCTTGTCTCCATAAAACAAAACTCGCCGTAGCGAGTTCAGATAAAAGAAAACCTCG 21151 ||||| | ||||||||||||||||| ||||||||||||||||||||||||||| ||||| Sbjct 11229 CATTTATCATCTCCATAAAACAAAACCCGCCGTAGCGAGTTCAGATAAAAGAAATCCTCG 11170 Query 21152 ACTGTG 21157 | ||| Sbjct 11169 TCAGTG 11164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130986306718956