Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq54 190 3e-43 seq332 147 3e-30 seq82 107 2e-18 seq397 98.7 1e-15 seq329 91.5 2e-13 >seq54 Length=99412 Score = 190 bits (210), Expect = 3e-43 Identities = 869/1351 (64%), Gaps = 58/1351 (4%) Strand=Plus/Minus Query 115557 TCGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGA 115616 ||| ||||| |||| || ||||| || || | |||||| ||||| | |||||| || | Sbjct 91246 TCGAAGGTAATACAGTCCTGTCTTTAGACCTTTCTTCCAAGCATAGAAATGCATCGAAGT 91187 Query 115617 CAACTTGGAGAGTGTTGGACTTTC-CATGAAGAGGTTCATACTTTGGGATTGATCGATGA 115675 | || | | ||||| | | || | || ||||| |||||| |||| ||||| Sbjct 91186 AAGTTTCGCAAA-GTTGGCGTCTAGCAAGTGGATATTCATGCTTTGGCTTTGACAGATGA 91128 Query 115676 AGCGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTC 115735 || || ||||| |||||||| ||||| | | || |||||||||||| |||| Sbjct 91127 AGGCACCTCGATCGGCCGCCATGTCAATGATGGCTTTTTGAGGGATTTCCCACACCGTTC 91068 Query 115736 TGTAGAGGTTCTTAATATCATCTGGGATATCCACGAT-ATTTTGGATAGAGCCACCTGCC 115794 | | | ||| ||||| | | |||||| || || | || || | || || ||| Sbjct 91067 TATGTAAGTTTTTAATGTGCTGTGGGAT-TCTACTAACATGCTGTACTGATCCGTTTGC- 91010 Query 115795 TTGACCATGAGATCCTT---CATATCCTTTGACCAGAGACCAATCTTCTTGAGATCCTCC 115851 || | ||||| || || ||| | | ||| || || | || | || || Sbjct 91009 -TG-CAATGAGTTCGTTTTTCATGGCATCATCCCATAGTCCTAAGTTGATCAGGTCGGTT 90952 Query 115852 ACGAGGTGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTG 115911 | |||||||| ||||| |||| ||||||||| | || || || ||| || ||| Sbjct 90951 AAAAGGTGCTTGTTGACGACAATAAACTCACCAGAAAGTACCCGCCTGGTATAAATATTG 90892 Query 115912 GTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGC 115971 | ||||| ||||||||||||||||| || |||| || || | || || || |||||| Sbjct 90891 GAAGTGTAAGGCTCAAAGCACTCATTATTGCCCAGTATCTGCGAAGTAGACGCAGTGGGC 90832 Query 115972 ATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCC-TAATGCGTTCCTTGAGGGC 116030 || ||||| | || | || || | ||| | || | | || | | ||| Sbjct 90831 ATAGGTGCTAGTAGTAATGAATTACGTACACCGTGGAGCTGTACTTCTTTTCGTAAGGT- 90773 Query 116031 GTCCCAGTCG----TAGTTGAGCTTTGTCTCCCCCTCCCACATATCAAACTGGAGGATAC 116086 |||||| || || ||| | | | ||| ||||||||||||| |||| ||| | Sbjct 90772 GTCCCAATCCCACCTACCTGAAGTAGGGGTTACCC-CCCACATATCAAATTGGAAGATGC 90714 Query 116087 CTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCC---CTCAACCTCCGCCAATT 116143 |||| || || || || | ||| || ||||| || || || || ||||| | Sbjct 90713 CTTGAGAAATGGGAGAACCTTGAAACGTTTCATAAGGTCCTTGCTGAATG---GCCAAGT 90657 Query 116144 C----GGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATT 116199 | | ||| | || | |||||| ||| || |||||||| ||| ||| | Sbjct 90656 CTTTAGAAGC---CGTC-ATGGCTGCAAAATAAATGGTCTCAAAGATGTCCTTATTTAAC 90601 Query 116200 GCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAAAATAAATACATCCGCGAGACCT 116259 | || || ||||||||| | | || || | ||| |||||| | ||| Sbjct 90600 TCACGTGCTTCTATGGAATCAAAAGGCATTCGTAACTTTAAAAAGGTATCCGCTAATCCT 90541 Query 116260 TGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACGGGA 116319 || || || | |||||| ||||| |||| | ||| || ||| || || || Sbjct 90540 TGCACCCCAATGCCAATGGGGCGGTGTCGGAAATTCGAGGTTCTTGCTTCAGGAACCGGG 90481 Query 116320 TAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGA 116379 ||| |||| ||||||| | | || ||||||||||| | || | | || |||| Sbjct 90480 TAATAATTGATATCGATGATTTTGTTGAGATTTTTGGTAGCTACATAGCTAATCTCATAC 90421 Query 116380 AGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGAC 116439 ||||||| | |||||| || |||| |||||| | | || || | || || || Sbjct 90420 AGCTTTTGATGATCAAATTGGCCAGTC---GCATTGATAAATTTGGGTAAAGCAATAGAG 90364 Query 116440 GCCAGATTACACACAGAGGTCTCATC--CTTATCAGTGTACTCTATAATTTCCGTACACA 116497 ||||| || ||||| | |||||| | || || ||||| || ||||| ||||| | Sbjct 90363 GCCAGGTTGCACACCGCAACCTCATCGGGTGAT--GTATACTCGATGATTTCAGTACATA 90306 Query 116498 AAT---TTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTT-ACACGCA 116553 | |||| |||||| || || || || || ||||| || ||| | || ||| Sbjct 90305 GGTTGCTTGA---CTTAATAGTTCCTAAATTTTTCTGATTCGATTTTCTATTGGCAC-TG 90250 Query 116554 TCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAT 116613 ||||| || | |||||| ||| | ||||| || | |||| || || || || ||| Sbjct 90249 TCCTTATACAACATATAAGGCATGCCCGTTTCGATCTGGGCCTCTAGGATGGCAAACCAC 90190 Query 116614 ACATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCG----TACTTTGTGTA 116669 | || ||| | ||| || | ||| |||| |||| |||||||| || Sbjct 90189 AGTTCTTGTGCT---TTAATGG-ATTTTCGGGCCTTTCCTTCTCGTTCATACTTTGTATA 90134 Query 116670 GAGGGCCTCAAACTCTTCACC--CACAGCCTCTGAGAGCCCTGGTGCCTTATCTGGACAG 116727 | ||| ||||| |||| || |||| |||| || || ||||| | || || || Sbjct 90133 TAAGGCTTCAAAGGCTTCTCCATAACAG--TCTGCCAGTCCCGGTGCTTCATTGGGGCAA 90076 Query 116728 AAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGC 116787 ||||| ||||||| || | ||| || || | |||||| ||||| | |||||||| Sbjct 90075 AAGAGCGACCATTCTTCATTGTTCTCTACACGTTGCATGAAAAGGTCAGAAATCCAGAGG 90016 Query 116788 GCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAA 116847 || |||| || || || || ||||| | || ||||| || | || ||| Sbjct 90015 GCATAGAACAGGTCGCGTGCACGCAACTCTTCTTTGCCGTGATTTTTTCGTAGGTCTAAA 89956 Query 116848 AAGTCCATGATATCCGCGTGCCACGGTTCCA 116878 || || | ||||| |||||||| ||||||| Sbjct 89955 AACTCAAAAATATCAGCGTGCCAAGGTTCCA 89925 >seq332 Length=17232 Score = 147 bits (162), Expect = 3e-30 Identities = 660/1034 (64%), Gaps = 39/1034 (4%) Strand=Plus/Minus Query 115558 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 115617 || || |||||||| || || || | || | ||||||||||| | ||||||||| | Sbjct 6192 CGAAGATAGTACATACCGGTTTTCAATCCTTTTTTCCAGGCATAGAAATGCATTGAAGTT 6133 Query 115618 AACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 115677 || || | |||| || | ||||| | || | |||||| |||||| ||||| Sbjct 6132 AATTTAGCAAGTGAAGGTTCAGCAATGAAAACATTAAAACTTTGACTTTGATCTATGAAT 6073 Query 115678 CGTCCCCGATCCGCCGCCATATCAATCA--CATCCTTCATCTTGATTTCCCACACAGTTC 115735 || | || || |||||||| || | | | || | |||||||| || ||| Sbjct 6072 GCACCTCTTTCAGCAGCCATATCGATGAGGGAACGTTGA--CGAATTTCCCAAACGGTTT 6015 Query 115736 TGTAGAGGTTCTTAATA-TCATCTGGGATATCCACGATATTTTGGATAGAGCCACC--TG 115792 | |||| ||| || ||| || || |||| | | |||||||| | || ||||| || Sbjct 6014 TATAGA-GTTGTTTATATTCTTCGGGGAGACCTGGAATATTTTGAACGGAACCACCATTG 5956 Query 115793 CCTTGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTCTTGAGATCCTCCA 115852 || || || | || || || ||| | ||||||||| | | ||||||| | | Sbjct 5955 GCT--ACGATCATATTTTTAATTTCCGGAGTCCAGAGACCCAATTCGATGAGATCTTGGA 5898 Query 115853 CGAGGTGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGG 115912 | || |||||||||| ||| ||||| ||||| || | |||||| |||| Sbjct 5897 GTAATTGTTTATTGACAATGGTAAATTCACCGGCGAGAACACGACGAGAATAGATATTGG 5838 Query 115913 TCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCA 115972 || ||||| || || || ||||| || || | |||||| | ||||||||| || |||| Sbjct 5837 ATGTATATGGTTCGAAACATTCATTATTTCCGAGGATTTGTGATGTGGAGGCAGTTGGCA 5778 Query 115973 TGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAG-GGCG 116031 | ||||| ||||| | || || | | ||| || || ||||| | | Sbjct 5777 TTGGTGCAATGAGTAAACTATTTCTTAAACCGGTGGTTTGGATCTTTTGTTTGAGTGAAG 5718 Query 116032 TCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTCCCACATATCAAACTGGAGGATACCTTGG 116091 ||| | | | || |||| || || | | ||||||||||| | ||||| ||||||| | Sbjct 5717 TCCAATCCCAACGTGGGCTTGGTGTCACAC-CCCACATATCATATTGGAGAATACCTTTG 5659 Query 116092 GACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTC 116151 || ||||| |||| |||| || ||||| || || || || ||||| || | | Sbjct 5658 GAAGCTGGACATCCTGCAAAAGTTTCATAAGGACCATCTTTTTCAGCCAACTCTGCGGAA 5599 Query 116152 GCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCG 116211 || |||||| || || || || || ||| | ||| | || | Sbjct 5598 GCAGTGAGGGCAGCAAAGTAAATGGTTTCGGCAATCTCACGATTTACAATAGAAGCACCT 5539 Query 116212 TCGGAATCAAACGCGAGACGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGG 116271 | ||||| || | ||||| | | | |||||||| || | |||||| | || | Sbjct 5538 GCTGAATCGAATGGAAGACGTAATGATAAGAATACATCAGCTAAACCTTGAATTCCAATA 5479 Query 116272 CCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCT-CCACGGGATAAAAATTCCT 116330 |||||||| | |||||| | ||| | || || ||| ||||| || |||| || Sbjct 5478 CCAATTGGTCTATGTCTGAGGTTACTCGTTTTGGC-TTCTGGAACGGGGTAGTAATTTCT 5420 Query 116331 ATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTA 116390 |||||| | | | || ||||| ||||| | | || ||||||||| | | || | Sbjct 5419 ATCGATGATCTTGTTGAGATTCTTGGTAATGATTTTAGTGATTTCAAATAATTGTTGATG 5360 Query 116391 ATCAAA---------ACTGCGA--GTCTCTTCATT----------GACATACTTAGGAAG 116429 |||||| || || |||| || || || ||| ||||| || Sbjct 5359 ATCAAATTCCATTTCCTTGGGATTGTCTGATCCTTTCTTGTGGACGATATATTTAGGGAG 5300 Query 116430 GGCGATTGACGCCAGATTACACACAGAGGTCTCATC--CTTATCAGTGTACTCTATAATT 116487 || ||||| || | |||||| |||| ||||| | || ||||| | | ||| Sbjct 5299 AGCAATTGATGCTAAATTACAAACAGCAACTTCATCAGGTGAT--GTGTATTGGACGATT 5242 Query 116488 TCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTA 116547 || ||||| ||||| || | |||||| || | || | |||||| || || | ||| Sbjct 5241 TCAGTACATAAATTACTACATTGAATGGTACCGAGATTTTGTTGATTGGATTTAGCATTA 5182 Query 116548 CACGCATCCTTGTA 116561 || ||||| || || Sbjct 5181 CAAGCATCTTTATA 5168 >seq82 Length=463168 Score = 107 bits (118), Expect = 2e-18 Identities = 287/431 (67%), Gaps = 6/431 (1%) Strand=Plus/Minus Query 12639 CGGGCGTGGACACCCAAAATCTTCTCGCGTCCGCGCACA-CTGGGTAGGGACACGGTGAT 12697 ||||| || || || ||||| ||||| ||| || | || | ||| ||| || Sbjct 445246 CGGGCATGAACCTTCAGGATCTTTTCGCGGCCGGTAACGTCCGGATTGGG-CACCACGAC 445188 Query 12698 CTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGT 12757 || ||| ||||| || || || || || | ||| || || | ||| ||||| || Sbjct 445187 CTGACGGTCAAAACGGCCCGGACGCAGCAAGGCCGGATCGAGAACATCGGGACGGTTGGT 445128 Query 12758 CGCCGCGATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTCAAGAGTTG 12817 ||| ||||| | | || ||| | | ||||| ||||||||||| || || || Sbjct 445127 CGCAGCGATCAGGATGACGCCTTCATTGGCCTCGAAACCATCCATCTCGACCAGCAGCTG 445068 Query 12818 ATTGATGGTTTGTTCACGTTCATCATTCGCGG-GCATACCACCCGCACTGCGTTGCTTAC 12876 || | || ||||| ||||| ||||| || || | ||| || | ||| || | Sbjct 445067 GTTCAGCGTCTGTTCGCGTTCGTCATTGCCGCCGCCCAG-ACCGGCGCCGCGATGACGGC 445009 Query 12877 CGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCAA 12936 |||| || || |||||||| ||||| | ||| || ||| ||| | || ||| | Sbjct 445008 CGACCGCATCGATTTCGTCGATGAAGATGATGCAGGGTGCATTCTTCTTCGCCTGTTCGA 444949 Query 12937 AGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGG 12996 | || || ||||| | | ||||||||||| || ||||| || || || | || ||| Sbjct 444948 ACATGTCACGCACACGCGATGCACCGACACCGACGAACATTTCAACGAAGTCGGAACCGG 444889 Query 12997 AACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTC 13055 | || | || ||| || || |||| |||||| |||||||| || || || || ||||| Sbjct 444888 -AGATGGTGAAGAACGGCACATTGGCTTCACCGGCGATGGCGCGCGCCAGAAGCGTCTTA 444830 Query 13056 CCCGTCCCTGG 13066 || || || || Sbjct 444829 CCGGTACCGGG 444819 >seq397 Length=83447 Score = 98.7 bits (108), Expect = 1e-15 Identities = 276/417 (66%), Gaps = 19/417 (5%) Strand=Plus/Plus Query 12701 ACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGC 12760 |||||| || |||||||| || ||||| || | || || ||||| | ||| || || Sbjct 48589 ACGATCGAAACGACCTGGACGAAGGAGAGCTTGATCGAGAATATCGGGTCTGTTGGTAGC 48648 Query 12761 CGCGATGACAACGATGCCCGTCTCGTTA-----TCGAAGCCATCCATCTCAGTCAAGAGT 12815 || | || || | | | || ||| | ||| |||||||| ||| ||| | | Sbjct 48649 AGCAAATACTACTA----CAT-TCTTTAATGGTTGGAAACCATCCATTTCAACCAATAAT 48703 Query 12816 TGATTGATGGTTTGTTCACGTTCATCATTCG---CGGGCATACCACCCGCACTGCGTTGC 12872 ||||||| || | ||||||||||| || | | | | ||| || || | |||| Sbjct 48704 TGATTGAGTGTATTCTCACGTTCATCGTTTGATCCAGAGAAACCTCCTTTACCTC-TTGC 48762 Query 12873 T-TACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAAC 12931 | | || | ||| || ||||| ||||| || || ||||| ||| | || ||| || | Sbjct 48763 TCTGCCAATGGCATCGATTTCATCAATAAATACAATACAAGGTGCACTTCTACGAGCTTC 48822 Query 12932 TTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGC 12991 | |||| | |||| || | | ||| ||||| ||||||||||| ||||||| || Sbjct 48823 TGCAAATAAGTCTCTAACACGAGCTGGACCAACACCAACAAACATCTCTACAAAATCGGA 48882 Query 12992 GGCGGAACATTGG--ATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGG 13049 | || | ||| | ||| || || |||| |||||| || | || || | | Sbjct 48883 ACCTGA--AGTGGAAAAGAATGGTACATTGGCTTCACCAGCAGTAGCCTTTGCCAACAAT 48940 Query 13050 GTCTTCCCCGTCCCTGGTTTCCCCGCGAGAAGGGCACCACGTGGGATCCTGGCACCA 13106 ||||| || || |||||| || | || ||||||||||| ||| |||||||| Sbjct 48941 GTCTTACCGGTACCTGGTGGACCAATCAAAATAGCACCACGTGGAATCTTGGCACCA 48997 >seq329 Length=40361 Score = 91.5 bits (100), Expect = 2e-13 Identities = 142/198 (72%), Gaps = 5/198 (3%) Strand=Plus/Plus Query 12791 GAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGG 12850 ||| |||||||||||| ||| | |||||| | || | |||||||||||||| || Sbjct 25747 GAAACCATCCATCTCAACCAACAATTGATTCAATGTATTCTCACGTTCATCATTAT--GG 25804 Query 12851 CATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACA 12910 || ||||| ||| || |||| ||||| |||||||| |||||||| || ||||| Sbjct 25805 AAT-CCACCACGACTACGAGATCTACCAACGGCATCAATTTCATCAATGAATACAATACA 25863 Query 12911 CGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTC-TCTTGGCACCGACACCCA 12969 || || ||||||| ||| || | |||| || | | ||| ||||||||| | Sbjct 25864 TGGAGTGTTGGCACGGGCTTCTTTGAACAATTCTCTAACACGTGATGG-ACCGACACCGA 25922 Query 12970 CAAACATCTCCACAAAAT 12987 |||||||||| | |||| Sbjct 25923 CAAACATCTCTATGAAAT 25940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613447582437840