Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_013600.1 Length=45169 Score E Sequences producing significant alignments: (Bits) Value seq2008 95.1 3e-15 >seq2008 Length=9006 Score = 95.1 bits (104), Expect = 3e-15 Identities = 234/353 (66%), Gaps = 4/353 (1%) Strand=Plus/Plus Query 17657 ACTGAGATTATCGACGCCCGCCTGCGCTACCCGCTAACCGCGCTGTTATTCGTGGAGTTC 17716 |||||| | |||||||| ||||| || || |||||| |||| | | ||||| Sbjct 7989 ACTGAGGTGATCGACGCGAAGCTGCGGTATCCAAACACCGCGTTGTTGTATATCGAGTTT 8048 Query 17717 GACGCTAAAGCGTTCCAGAACATCCCGCGCGTTTCCATTAAGTGCAAAGGCCGCAAAGTG 17776 ||| | ||||| | |||||| || | ||| | ||| | |||||||| | Sbjct 8049 TCCGCCGAGCAGTTCCGCAGTATCCCGGCAGTCACTATTGATTGCGACGGCCGCAAGTGG 8108 Query 17777 CTGGTTCCGAACAACTACGACCC--GATCAACCATACCTATTCGGGCGACTGGGACGGGA 17834 | ||| |||| ||| |||||||| |||| || ||| || |||| ||||| || | Sbjct 8109 CAGGTGCCGAGCAATTACGACCCTCGATCGCGCAG--CTACTCTGGCGTTTGGGATGGCA 8166 Query 17835 CGTTTAAACGCGCATGGACGGATAACCCTGCGTGGCACTGGTATGATATTTGTATTACTG 17894 | || || |||||||| || ||||||| ||||| |||| | | | | Sbjct 8167 CATTCAAGGAGGCATGGACCGACAACCCTGTCTGGCATACCTATGGCCTAACCACAAACG 8226 Query 17895 AGCGCTTCGGCCTCGGTCGCCGGATCAAGCCGCAAATGCTAAACAGATATGCGCTCTACC 17954 | |||||||||||||| || || ||||||||| ||| | ||| | | ||| |||| Sbjct 8227 ACCGCTTCGGCCTCGGCCGTCGCATCAAGCCGTGGATGGTCGACAAGTGGGAGCTGTACC 8286 Query 17955 AGATTGCGAAGCGCTGCGATCAACTGGTCAGCGACGGCAACGGCGGGCAGGAA 18007 ||| || || ||||||||| |||| |||| || || || |||||| Sbjct 8287 GCATTTCGCAGTACTGCGATCAGATGGTGCCGAACGGGAAGGGTGGCCAGGAA 8339 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144405867761028