Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_014467.1 Length=176788 Score E Sequences producing significant alignments: (Bits) Value seq386 82.4 9e-11 >seq386 Length=121086 Score = 82.4 bits (90), Expect = 9e-11 Identities = 130/183 (71%), Gaps = 4/183 (2%) Strand=Plus/Minus Query 40052 TCGCGGGATC--ATCGTTTCCGCCTGGAACCCTGTTGATCTT-GATGATATGGCTTTGCG 40108 |||||| || ||||||||||| ||||| || | | || | ||||| ||||| ||| Sbjct 3442 TCGCGGCGTCTGATCGTTTCCGCATGGAATCCGGC-GCTCGTCGATGAAATGGCGCTGCC 3384 Query 40109 TCCGTGTCACTGTTTCTTCCAGTTCGTCGTAATCAACGGTAAACTGTCTCTACAGTGGTA 40168 || || ||||| | ||||||||| ||| | |||| || || || ||| || Sbjct 3383 GCCCTGCCACTGCCTGTTCCAGTTCTACGTGGCCGACGGAAAGCTTTCCTGCCAGCTCTA 3324 Query 40169 TCAGCGTTCAGTTGATGTCTTCTTAGGGTTGCCGTTCAATATCGCCTCCTACGCTCTCCT 40228 ||||| || | ||| |||| | || |||||||||||||||| ||||| || || || Sbjct 3323 CCAGCGCTCCGCCGATATCTTTCTCGGCGTGCCGTTCAATATCGCATCCTATGCCCTGCT 3264 Query 40229 GAC 40231 ||| Sbjct 3263 GAC 3261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565538638441920