Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_014636.1 Length=225268 Score E Sequences producing significant alignments: (Bits) Value seq1 93.3 6e-14 seq464 86.0 9e-12 >seq1 Length=177052 Score = 93.3 bits (102), Expect = 6e-14 Identities = 71/83 (86%), Gaps = 1/83 (1%) Strand=Plus/Minus Query 189965 GTGCGGATGGTCGGACTCGAACCGACACGCCTAT-GGCGCTAGAACCTAAATCTAGTGCG 190023 |||||||||| ||||||||||| || |||| ||||||||| ||||| ||||| ||| Sbjct 136101 GTGCGGATGGAGGGACTCGAACCCCCATGCCTTGCGGCGCTAGATCCTAAGTCTAGAGCG 136042 Query 190024 TCTGCCAATTTCGCCACATCCGC 190046 ||| ||||||||||||||||||| Sbjct 136041 TCTACCAATTTCGCCACATCCGC 136019 >seq464 Length=181769 Score = 86.0 bits (94), Expect = 9e-12 Identities = 70/84 (83%), Gaps = 1/84 (1%) Strand=Plus/Plus Query 189963 TGGTGCGGATGGTCGGACTCGAACCGACACGCCTATGGCGCTAGAACCTAAATCTAGTGC 190022 |||||||||| | ||||||||||| |||| | | ||| ||||||||||||| |||| Sbjct 177422 TGGTGCGGATAGAGGGACTCGAACCCCCACGG-TCTCCCGCCAGAACCTAAATCTGGTGC 177480 Query 190023 GTCTGCCAATTTCGCCACATCCGC 190046 |||| |||||||||||| |||||| Sbjct 177481 GTCTACCAATTTCGCCATATCCGC 177504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 720659563101120