Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq332 187 3e-42 seq886 114 2e-20 seq82 113 6e-20 seq54 95.1 2e-14 seq392 86.0 8e-12 >seq332 Length=17232 Score = 187 bits (206), Expect = 3e-42 Identities = 1130/1774 (64%), Gaps = 79/1774 (4%) Strand=Plus/Plus Query 111528 AGAGACTACGACTTTGGTTATTTTGGTCTCAAGACCCTCGAGAAAAGCTACCTCCAAAGA 111587 ||||| | ||| | | || |||||| | || || | || | ||| || || || | | Sbjct 4361 AGAGATTTCGATTACGATTTCTTTGGTTTTAAAACTTTGGAAAGAAGTTATCTACACAAA 4420 Query 111588 CTGGATGGTGTCTTGATGGAAACCCCACAGTACATGTTCATGCGGGTCGCGATCGGTATC 111647 | ||||| || | | ||| || || | ||||| ||||| || | | ||||| Sbjct 4421 ATTAATGGTATCATTGTAGAACGTCCTCAACATATGTTGATGCGTGTTTCTTTGGGTATT 4480 Query 111648 CATGGGGAAGATATTGATTCTGTTTTGGAGACATACGACAAGATGTCCCGTGGTAT-GTT 111706 ||||| || ||||||||| |||| | || || || || | || || || ||| Sbjct 4481 CATGGTGAGGATATTGATAATGTTATCCTTACCTATGATAAATTATCAT-TGAAATTGTT 4539 Query 111707 CATCCACGCAACACCAACCCTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTG 111766 | || || || || || || ||||| |||||||| || || |||||||| ||| Sbjct 4540 TACTCATGCTACTCCTACACTTTTCAATGCTGGTACTCCTTATCCTCAAATGTCTTCTTG 4599 Query 111767 TTTCCTTATTGCAAAC-AAGGAGGATTCAATCAATGGCATTTACGGCACTCTCACTGAAT 111825 |||| || | |||| ||||| ||| ||| | || ||||||| || || | || Sbjct 4600 TTTC-TTGGTACAAATGAAGGATGATAGTATCGAGGGAATTTACGATACCCTAAAACAAA 4658 Query 111826 GTGCCCAAATCTCAAAGTGGGCTGGTGGTATCGGGAT-GCACATC-CATGATGTCAGAGC 111883 |||| ||| ||||||| ||||||||||| || || || || || ||| || | || Sbjct 4659 CTGCCTTAATTTCAAAGTCTGCTGGTGGTATTGGTATTGCTGTTCACAAGAT-TC-GTGC 4716 Query 111884 CAACAAGTC-TCGTATTAGAGGTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTC 111942 | || | |||| | ||||| ||||| || |||| | |||||||||||| Sbjct 4717 TG-CTCGTAGTTATATTCGTGGTACCAATGGAACTTCCAATGGATTGGTTCCAATGCTTC 4775 Query 111943 GCGTATTTAACGCCACAGCGCGCTATGTAAACCAAGCTGGGCGTC---GCAAGGGATCTA 111999 | || ||||| | || || || |||||| | |||| ||| | | || || || Sbjct 4776 GTGTCTTTAATGATACCGCTCGTTATGTAGATCAAGGTGGAGGCAAGAGAAAAGGTGCTT 4835 Query 112000 TCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCA 112059 | || || ||| | || |||||||| || ||||| | || || | || ||| | Sbjct 4836 TTGCCGTTTATTTGGAACCATGGCATGCAGATATTTTTGAATTTTTGGATTTGAAAAAGA 4895 Query 112060 ACCAAGGTGATGAGGAGGCGCGGTGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGAT 112118 | || || | || || || ||| || ||||| |||| || |||||| || | ||| Sbjct 4896 ATCACGGAAAGGAAGAAATTCG-TGCTCGTGATCTTTTCTATGCCCTCTGGGTTTCCGAT 4954 Query 112119 CTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCA 112178 ||||| ||| | | ||||| | || | ||||||| | |||||||| | | ||| Sbjct 4955 CTCTTTATGGAACGTGTTGAAACCAATGCCGATTGGTCATTGTTTTGTCCCAATGAAGCA 5014 Query 112179 CCCGGTCTCTCCGA-TGCCGTGGGTGAGGAGTTTGAAGCCCTCTACACAAA-GTACGAGG 112236 || || ||| |||| || ||| || || ||| || | || | || || | | Sbjct 5015 CCAGGACTCGCCGAATGTTATGGA-GATGAATTT--AGACAATTATATGAACGTT--ATG 5069 Query 112237 AAGAAAGTC--GGGCGACTGCGACGG--TGCCA--GCTGCCGATGTGTGGAAAGCTATTC 112290 || | || || | | || || || || ||| || | ||| ||||| Sbjct 5070 AATCCACTCCAGGTTTAGTTCGTCGTGTTGTCAAAGCTCAAGAACTCTGGTTCGCTATCA 5129 Query 112291 TCAAGTCTCAAACCGAGACTGGTACACCATATATGCTTTACAAAGACGCCTGTAACCAAA 112350 | | ||||| | || |||||||| |||| | | || ||||| || ||||| | Sbjct 5130 TTGACTCTCAGATTGAAACTGGTACTCCATTCTTTTTATATAAAGATGCTTGTAATGCTA 5189 Query 112351 AGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGG 112410 | |||||| | ||| | ||| || | || || | ||||| |||||| | Sbjct 5190 AATCCAATCAACAAAATCTCGGTACCATTCAATGTAGTAATTTATGTACTGAAATCGTCC 5249 Query 112411 AATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGT 112470 ||| ||| ||||| ||||| ||||| | |||||||| |||||||| || | Sbjct 5250 AATACACATCACCTGATGAAGTTGCTGTTTGTAATTTAGCATCAATTGCTCTCCCTAAAT 5309 Query 112471 ATGT-------------GGATCCAGAGA----CAAAGACAT-----TTGATTATGAAAAA 112508 || | ||||| ||| | ||| || || ||||| || || || Sbjct 5310 ATATCGTCCACAAGAAAGGATC-AGACAATCCCAAGGAAATGGAATTTGATCATCAACAA 5368 Query 112509 CTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGATAGAAATTTT 112568 | ||| | || |||| | || || || || |||| | || |||||||||| Sbjct 5369 TTATTTGAAATCACTAAAATCATTACCAAGAATCTCAACAAGATCATCGATAGAAATTAC 5428 Query 112569 TACCCCGTTG-AGACTGCTCGTAAATCTAATA---TGAGACACCGTCCAATTGGTCTCGG 112624 ||||||||| ||| | ||| | | || | ||||| | ||||||||| | || Sbjct 5429 TACCCCGTTCCAGAAGCC----AAAACGAGTAACCTCAGACATAGACCAATTGGTATTGG 5484 Query 112625 TGTCCAAGGTCTCGCGGATGTATTCAT-TCTTTGTCGCCACGCATTTGATTCCGACGAAG 112683 | |||||| | || ||||||||| | || || || | |||| ||||| | | | Sbjct 5485 AATTCAAGGTTTAGCTGATGTATTCTTATCATTA-CGTCTTCCATTCGATTCAGCAGGTG 5543 Query 112684 CGAAGGAAATCAATGCGCGTATATTT--GAGACAATGTATCACGCCGCTCTTGAGGCGAG 112741 | | ||| || | | ||| || || || || || || || || Sbjct 5544 CTTCTATTGTAAAT-CGTG-AGATTGCCGAAACCATTTACTTTGCTGCCCTCACTGCTTC 5601 Query 112742 TTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACA 112801 | |||||||| || |||||||| |||||||| |||| || | ||||||||| | Sbjct 5602 CGCAGAGTTGGCTGAAAAAGATGGTCCTTATGAAACTTTTGCAGGATGTCCAGCTTCCAA 5661 Query 112802 AGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCAC--TACGACTGGGAC 112859 ||| | || |||| ||||||||||| | ||| ||||||| ||| | || ||| Sbjct 5662 AGGTATTCTCCAATATGATATGTGGGGTG-TGACACCAAGCC-CACGTTGGGATTGGACT 5719 Query 112860 GCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCAATG 112919 | ||||| || ||| | | ||| | | || ||| | | || ||||||||| Sbjct 5720 TCACTCAAACAAAAGATCCAAACCACCGGTTTAAGAAATAGTTTACTCATTGCACCAATG 5779 Query 112920 CCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACG 112979 ||||| |||||||| |||||||| | || ||||||||||| || ||||| || || | Sbjct 5780 CCAACTGCCTCCACATCACAAATCCTCGGAAATAATGAATGTTTCGAACCATATACATCC 5839 Query 112980 AACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCATCTCGTG 113039 || |||||| | | ||||| || || ||| |||||||| || || | | Sbjct 5840 AATATCTATTCTCGTCGTGTTCTCGCCGGTGAATTTACCATTGTCAATAAACAATTACTC 5899 Query 113040 GATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCATGGTGAAAGC- 113098 | || |||| || | ||||||||| | ||| || || || | || || ||| Sbjct 5900 CAAGATCTCATCGAATTGGGTCTCTGGACTCCGGAAATTAAAAATATGATCGT---AGCC 5956 Query 113099 --GGGTGGTTCCATTCAAAATATTGTGGATATTCCAGATGAAATTAAGAAGTTGTACCGC 113156 ||||||||| ||||||||||| | | | || || ||| ||| | | || Sbjct 5957 AATGGTGGTTCCGTTCAAAATATTCCAGGTCTCCCCGAAGAATATAAACAACTCTATAAA 6016 Query 113157 ACAGTTTGGGAAATCAAGATGAAGGAT--GTCATTGACATGGCCGCAGATCGTGGTCGCT 113214 || ||||||||||| | || | | |||| || ||||| || || | ||| | Sbjct 6017 ACCGTTTGGGAAAT--TCGTCAACGTTCCCTCATCGATATGGCTGCTGAAAGAGGTGCAT 6074 Query 113215 TCATTGATCAAAGTCAAAGTATGAATCTATTCAT 113248 |||| ||||||||||||||| | ||| | ||||| Sbjct 6075 TCATAGATCAAAGTCAAAGTTTTAATGTTTTCAT 6108 >seq886 Length=30124 Score = 114 bits (126), Expect = 2e-20 Identities = 190/271 (70%), Gaps = 4/271 (1%) Strand=Plus/Plus Query 13722 AATTACCGCGAGTCTTACGGACTGTTTGCATGCTCCGGAATCCTCTTCAACCATGAATCA 13781 ||||| || ||| |||| ||| || ||| || ||| ||| | || ||||| ||||| Sbjct 23840 AATTATCGTGAGGCTTATGGAATGAGTGCCTGTAACGGTATCTTGTTTAACCACGAATCT 23899 Query 13782 CCGAGACGAGGTGCAGACTTTGTGACCATGAAGATTAC-CGAGG-GTATCAAACAAATCA 13839 || ||| ||||| || ||||| |||| ||||| || || || | | ||| Sbjct 23900 CCAAGAAGAGGTCCAACTTTTGTAACCAGAAAGATCACTCGTTTCGTTGCT--CGTATCG 23957 Query 13840 TGAAGGGTGAAAAGGAGTTCATTGAATTGGGTAACATAAACGCGGAGAGAGATTGGGGTC 13899 || | || || | | | ||||||||||| || || | | |||||||||| Sbjct 23958 CCCTCGGACACAAAGAAACCTTGTACTTGGGTAACATCAATGCTAAACGTGATTGGGGTC 24017 Query 13900 ACGCGAAGGACTATGTTGAAGCTATGTGGCTCATGCTTCAACAAGAGGAAGCCGACGAAT 13959 |||| || ||||| || |||||||||||||||||| | |||||||| ||| ||| || | Sbjct 24018 ACGCTAAAGACTACGTCGAAGCTATGTGGCTCATGTTACAACAAGACCAAGTCGATGACT 24077 Query 13960 ATGTAGTAGCAACGGGTGAGACCCATTCAGT 13990 |||| | || || ||||| |||||| |||| Sbjct 24078 ATGTCATTGCCACTGGTGAAACCCATGCAGT 24108 >seq82 Length=463168 Score = 113 bits (124), Expect = 6e-20 Identities = 217/314 (69%), Gaps = 12/314 (4%) Strand=Plus/Minus Query 15972 TCAAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCT 16031 || |||||||||||||| || |||||||| | || ||||| ||||| ||||| || Sbjct 445096 TCGAAACCATCCATCTCGACCAGCAGCTGGTTCAGCGTCTGTTCGCGTTCGTCATT-GCC 445038 Query 16032 GGCATAC-CACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGAT 16090 | | | ||| || | ||| || || || ||||| || || || ||||||| ||| Sbjct 445037 GCCGCCCAGACCGGCGCCGCGATGACGGCCGACCGCATCGATTTCGTCGATGAAGATGAT 444978 Query 16091 GCATGGTTGATT----TTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCA 16146 ||| ||| ||| ||||| | ||| || | || || |||||| || || | Sbjct 444977 GCAGGGTGCATTCTTCTTCGCCTG----TTCGAACATGTCACGCACACGCGATGCACCGA 444922 Query 16147 CACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGAT 16205 |||| || ||||| || || |||| | ||| | || | || ||| || ||||| | | Sbjct 444921 CACCGACGAACATTTCAACGAAGTCGGAACCGG-AGATGGTGAAGAACGGCACATTGGCT 444863 Query 16206 TCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGG 16265 ||||| || ||||| || || ||||| |||||||| ||||| || ||| |||| || Sbjct 444862 TCACCGGCGATGGCGCGCGCCAGAAGCGTCTTACCGGTACCGGGAGGACCGACGAGCAGC 444803 Query 16266 GCACCTCGTGGAAT 16279 | || || ||||| Sbjct 444802 ACGCCGCGCGGAAT 444789 >seq54 Length=99412 Score = 95.1 bits (104), Expect = 2e-14 Identities = 185/268 (69%), Gaps = 8/268 (3%) Strand=Plus/Plus Query 102048 CTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAA-GCCATCCA 102106 ||||| || | || ||||||||| | || ||||| || ||| || |||||| | Sbjct 88340 CTCATTGATACCTACATTAAGGATCCTCAAGA-AAGAAATCGCCTTTTCAATGCCATCGA 88398 Query 102107 AACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTC 102166 || | ||| || | || ||||| || |||||| | ||| | || | ||| | Sbjct 88399 CACCCTCGACTGTGTTAAGAAAAAAGCAGAATGGGCTTTACGTTGGATAGA--CCAAG-C 88455 Query 102167 GCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGG 102226 | ||| ||||||| ||||| | || ||||| ||| || || || ||||||||||| Sbjct 88456 GAGTT---TTGCTGAAAGACTCATTGCCTTTGCAGCTGTAGAAGGCATTTTCTTCTCTGG 88512 Query 102227 TTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTC 102286 | ||| ||| | || | |||||||| || | || | ||||| ||||| ||||||| Sbjct 88513 TAGCTTTTGCTCGATCTTCTGGCTCAAAAAAAGGGGATTAATGCCCGGTCTTAGCTTCTC 88572 Query 102287 CAACGAGCTTATCTCTCGTGACGAGGGA 102314 |||||| || || ||| | ||||| ||| Sbjct 88573 CAACGAACTCATTTCTAGGGACGAAGGA 88600 >seq392 Length=75530 Score = 86.0 bits (94), Expect = 8e-12 Identities = 245/375 (65%), Gaps = 9/375 (2%) Strand=Plus/Minus Query 176701 TGGCCAGAAGTAGTGAATCATATTGAGAATGAGACCCTTGATGTGGGAACCGTCGTTATC 176760 |||||| || || ||||| | ||||| || |||||| || || || ||||| |||| ||| Sbjct 66677 TGGCCAAAAATATTGAATAAAATTGATAAAGAGACCTTTAATATGAGAACCATCGTAATC 66618 Query 176761 GGCATCCGTCATGATCATGAGACGACCATACCGAAGCTCGGAAACATCTTGATAGTCCT- 176819 ||| ||||| | | | ||| ||||| |||||||| || | | ||||| || | Sbjct 66617 TTGATCAGTCATCAATAATACACGTCCATAACGAAGCTCTGAGAAACTTTGATCATCTTC 66558 Query 176820 -TAC-----CCTGTTGAAGA--CCCAAGATCTTCTTGAGATCGTTGAACTCTTGGTTTGA 176871 ||| | ||| | | | |||||||| || | |||| ||| |||| ||| || Sbjct 66557 ATACTTTTTCGTGTGGGATAATCCCAAGATATTGGTAAGATGTGTGATTTCTTCGTTGGA 66498 Query 176872 TGTGAGCTGTGTGACAGAGGCATCACGAACATTCTTACACTTCCCACGAAGAGGGAAGAC 176931 | | ||| || || |||| | |||||| | || ||||| || ||||| || Sbjct 66497 TAATAATTGTTTGGGAGTTACATCTCTGACATTCAACAATTTTCCACGGAGTGGGAAAAC 66438 Query 176932 ACCGTAGTGATCGCGACCAACCACAGAGAGACCCGCAACCGCGAGCGTTTTCGCAGAATC 176991 ||| ||| | | ||| | ||| | || | | || || | || |||||||| Sbjct 66437 ACCATAGGCACTTCTACCCAATACACTCAATCCTGACAAAGCCAGTGACTTGGCAGAATC 66378 Query 176992 ACCCTCTGTCACGATGAGTGTACACTTGCCAGATTGTGCCGTACCCGCCTTGTTCGCATC 177051 |||||||| | ||| | ||||| | |||| | ||| ||| || ||||| Sbjct 66377 TCCCTCTGTAATGATCAACGTACATTCCTGAGATCTAGGACCACCTGCCCAATTGGCATC 66318 Query 177052 ATCCAATTTGGGAAT 177066 ||||||||| || || Sbjct 66317 ATCCAATTTCGGGAT 66303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620682079357280