Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_015265.1 Length=37236 Score E Sequences producing significant alignments: (Bits) Value seq1445 390 3e-104 seq1635 156 1e-33 seq1317 100 7e-17 >seq1445 Length=14432 Score = 390 bits (432), Expect = 3e-104 Identities = 969/1434 (68%), Gaps = 49/1434 (3%) Strand=Plus/Minus Query 33247 CGCTATCGCGTGACCTACATCGGCATTGACACGACCGGGATCGGGCAGGGCGTGTATCAG 33306 ||||| | |||||||||||||| || || | ||||| | || |||||| ||| Sbjct 13185 CGCTACTGGGTGACCTACATCGGGATCGATATCACCGGCACGGGTTCCGGCGTGGCGCAG 13126 Query 33307 CTCGTCACGAAGTTTTTCCCGGCCGCGACGCCGTTCCACTACTCGGTGGAAATCAAGACC 33366 || || | | |||| |||||| | || ||||| |||||| ||| |||| ||| Sbjct 13125 CTGGTGAAGCAGTTCTTCCCGAACATCACCACGTTCAGCTACTCACCCGAAGTCAAAACC 13066 Query 33367 GCGCTGGTGATGAAGGCGCAGAACGTGATCCGCAAGGGTCGGCTCGAGTTCGACGCCGGC 33426 |||||| ||||||| | |||| ||| || || |||| |||||||| || ||| Sbjct 13065 CGCCTGGTGCTGAAGGCTTACGACGTCATCAAAAACGGCAGGCTGGAGTTCGATGCGGGC 13006 Query 33427 TGGAACGATCTCGCCGCGTCATTCATGGCGATCAAGAAAACCATCACGCCCAGCGGCCTG 33486 |||| ||| | || |||||| ||||| ||| ||||| ||||| || ||| | | Sbjct 13005 TGGACGGATATGGCGCAGTCATTGATGGCTATCCGCAAAACAATCACCGCCTCCGGGC-G 12947 Query 33487 CAGGT-CACGTACAAGGCGAGCCGCTCGGAAGAAGCGAGCCACGGCGATCTCGCCTGGGC 33545 || || ||| |||| ||| | ||| | || || || |||| | ||| || || ||||| Sbjct 12946 CATGTTCACTTACACGGCCGGTCGCACAGACGAGACGGGCCATGCCGACCTAGCGTGGGC 12887 Query 33546 GTGCATGCACGCGCTGGCGAACGAGCCGCTCGAAGGGGCGACTGCCACCAATACCGGATT 33605 | | ||||||||| ||||| || || |||||| ||| | | || |||||||| Sbjct 12886 GCTGTTCCACGCGCTGCACAACGAACCCCTTGAAGGGCAGACCACGGCGAACACCGGATT 12827 Query 33606 CATGGAGATTTTCTGATGTC---ACGCAAGTATCGACGCGGCGCCGGGCGCCGCGCACAC 33662 |||||| | |||||| ||| ||| ||||| || || || ||| | Sbjct 12826 TATGGAGTCCTACTGATGAGCAGACGTAAG------CGCGGAACCCAGCTG-GC-CAC-C 12776 Query 33663 GATCGCACCGAGCCGGTG--GCCGACATGCAGTCGGCCTCGGCCACGCGCGCGGAAGTGT 33720 | || | | | ||| || | || ||| | || | | || || | |||| || Sbjct 12775 GCTC--AGCCACCCGTTGAAGGGGATTTGCTGCCGCCTGAGTCCGGGCCGGTTGAAGCGT 12718 Query 33721 TCTCGTTCGGCGA-CCCGATCGCCGTGCTGGATCGGCGCGAGCTGCTCGACTACGTCGAG 33779 || | ||||| || |||| || ||||| ||||| | || ||| | ||||||||| | ||| Sbjct 12717 TCACTTTCGGTGATCCCGCTC-CCGTGTTGGATAGCCGGGAGATCCTCGACTACCTGGAG 12659 Query 33780 TGCATGCGCATGGGGAACTGGTACGAGCCGCCGCTGCCGCTCGACGGGCTCGCGCGTTCG 33839 ||| | || || |||| || | ||| || | | ||||| || ||| || Sbjct 12658 TGCTGGGCCAATGGCCGTTGGTTTGAAACACCGATGTCCATGGACGGCCTGGCGAAAACG 12599 Query 33840 TTCCGGGCC-GCGCCGCATCACAGCTCGGCCATCTACGTGAAGCGCAACATCCTGGTGCA 33898 ||||||| ||| | | | | |||| | | || | ||||||||||| || | | Sbjct 12598 ACCCGGGCCAGCGT-GTACCTCCAGTCGGGC-TGAACTTCAAGCGCAACATGCTTGCCCG 12541 Query 33899 GTCGTACATCGAGCATCCGCTGCTGCCGCGCGCGGACTTCAGCCGGTTCGTGCTGGAGTA 33958 ||| | | || | |||| || ||| | ||| | ||||| ||||| | Sbjct 12540 CACGTTCGTTCCCCACCGGCTGTTGAGTCGCCAAGCCTTTGAGCAGTTCGCCCTGGACTG 12481 Query 33959 CCT--GGTGTTCGCGAATAGCTACCTCGAGCGGCGCACGAACCGGCTCGGCCAGCCGATG 34016 || ||||| || | | ||||||| || ||||| ||| |||| || | | ||| Sbjct 12480 GCTCTGGTGTG-GCAACT-GCTACCTGGAAAAGCGCAACAACATGCTCCGCAACACCATG 12423 Query 34017 GCGCTGAAATGCT--CGCTCGCGAAATACACGCGGGTCGGCGTCGAGCCGGA---CCAGT 34071 | ||| ||| | || ||||| |||| ||| || || || ||| | | | Sbjct 12422 GGCCTGC--TGCCTCCACTGGCGAAGTACATGCGCCGGGGTGTGGACATGGAGACCTATT 12365 Query 34072 ACT-GGTTCGTGAC-GAACGTGCGTGAACCGCACGCGTTTCCGGCGGGCGCCATCTATCA 34129 || ||| |||| | | | | || ||| | | ||| | | || | |||| || Sbjct 12364 ACCAGGTGCGTGGCTGGAAGGACG--AAC---ATGAATTTGCCCCCGGTTCGATCTGCCA 12310 Query 34130 CCTGTACGAGCCGGACCTGAACCAGGAGATTTACGGGCTGCCCGAATACCTGTCGGCGCT 34189 | || |||| | || | |||||||| || ||||| ||||| || | ||| | ||||| Sbjct 12309 CTTGCGCGAGGCCGATATCAACCAGGAAATCTACGGCCTGCCGGAGTGGCTGGCAGCGCT 12250 Query 34190 G-AACTCGACCTGGTTGAACGAGAGCGCGACGCTGTTTCGTCGGCGCTATTACAAGAACG 34248 | || || ||| | ||||||||||| |||||||| || || || ||||| |||| Sbjct 12249 GCAAAGCGCACTGCTC-AACGAGAGCGCCACGCTGTTCCGGCGCAAGTACTACAACAACG 12191 Query 34249 GCAGCCATGCGGGCTTCATCCTGTACATGACCGACCCGGCCGACAAGCAGGAGGACGTCG 34308 |||||||||| || ||||| ||||||||||||||| |||| | ||| | |||||| ||| Sbjct 12190 GCAGCCATGCCGGTTTCATTCTGTACATGACCGACGCGGCGCAGAAGGAAGAGGACATCG 12131 Query 34309 ACAACCTGCGCGCGGCGCTGAAGAACGCGAAGGGGCCGGGCAACTTCCGGAACCTGTTCA 34368 || |||||| | || ||||||||| |||| ||||| |||||||| || |||||||| Sbjct 12130 ACTCACTGCGCACCGCACTGAAGAACTCGAAAGGGCCAGGCAACTTTCGCAACCTGTTTG 12071 Query 34369 TGTACGCGCCGAAGGGCAAGAAGGACGGGATCCAGCTGCTGCCGATCGGCGAGGTGGCGG 34428 ||||||||||| |||||||| ||||| || ||||| | ||| | ||||||| |||| Sbjct 12070 TGTACGCGCCGGCAGGCAAGAAAGACGGCATTCAGCTCATCCCGGTGAGCGAGGTTGCGG 12011 Query 34429 CGAAGGACGAGTTCTGGAACATCAAGAAGGTGA-CGGTCGAGGATCAGCTCGCGGCGCAC 34487 | |||||||| ||| | ||||| || | | | || || |||| |||||||||| Sbjct 12010 CCAAGGACGAATTCAGCTCGATCAAAAACATCAGCCGT-GACGATCTGCTCGCGGCGTTG 11952 Query 34488 CGCGTGCCGCCGCAGTTGATGGGGATCATCCCGTCGAACGCGGGCGGGTTCGGCGACG-T 34546 ||| | || |||||||||||||| ||| | ||| |||||||||||| || || | || | Sbjct 11951 CGCATTCCACCGCAGTTGATGGGCATCGTGCCGCAGAACGCGGGCGGTTTTGG-GTCGTT 11893 Query 34547 GCACAAGGCCGCCGAGGTGTTCAACGAGC-TCGAGATCGAGCCGCTGAAGGCGCGGCTGC 34605 || |||| || ||||| || || | |||| | |||||| || ||||| ||||| Sbjct 11892 GCGGGAGGCTGCTGAGGT-TTGGGCGGTCAACGAGCTGGAGCCGTTGCAGGCGAGGCTGG 11834 Query 34606 GGGAGGTGAACGACTGGCTCGGGATCGAGGTGGTGCGCTTCAGGGACTTCGAGC 34659 |||| ||||| ||||| || ||||| || | |||| ||| || |||| Sbjct 11833 CCCAGGTCAACGAGTGGCTGGGTGAAGAGGTTGTCAGGTTCAAGGAGTTTGAGC 11780 >seq1635 Length=1340 Score = 156 bits (172), Expect = 1e-33 Identities = 590/903 (65%), Gaps = 57/903 (6%) Strand=Plus/Plus Query 9132 TTTCTGGCCGAGATGGAGAAGGTCGTCCCTTGGTCGCGGCTGCTGTCGGTGATCGGGCCG 9191 || ||| ||||||||| ||| || || ||| | | || | | |||||| ||| Sbjct 277 TTCCTGATCGAGATGGATCGGGTGGTGCCGTGGAAGGGCTTGATTGCTTTGATCGAGCCA 336 Query 9192 TATTACCCGAAGGGCGAGCGTGGCCGGCCGCCGATTGGCCTGGAACG-GATGCTGCGGAT 9250 |||| ||||| || || ||||||| ||| | | | | || | ||||||||| | Sbjct 337 CATTATCCGAAAGGTGAAGGTGGCCGTCCGGCC-TACCCGTTGATGGCGATGCTGCGTGT 395 Query 9251 CTACTTGCTGCAGCAGTGGTACGGGTTGTCGGACGAAGGGCTTGAAGATGCGCTCTACGA 9310 | |||||||| | |||| ||| | || || | | || || ||||| ||||| Sbjct 396 GCATCTGCTGCAGAACTGGTTCGGCTACAGCGATCCAGCGATGGAGGAAGCGCTGTACGA 455 Query 9311 CAGCATCGCGATGC-GCGCC--TTCGCGGGCATCGACCTGGCGCGCGAGAACGTGCCGGA 9367 | || |||| | ||||| || || || | |||||| |||| | || || Sbjct 456 AACCA---CGATCCTGCGCCAGTTTGCCGGGCTGAACCTGGAGCGCA------TCCCCGA 506 Query 9368 CGCCACCACGCTGTTGAAATTCCGGCGCCTGCTGGTCGAGCACGCACTGACGCGAAAGC- 9426 || ||||| | | || ||||| ||| |||||| | |||| ||| || | || Sbjct 507 CGAAACCACCATTCTCAACTTCCGCCGCTTGCTGGAGAAACACGAGCTGGCG-GCCGGCA 565 Query 9427 TGTTCGACGAGATC---GGC-ATCGAGTTGTGCGAGCGCGGGCTGATGATGAAGGAAGGC 9482 | ||| | ||| ||| ||| || |||| ||||| ||| | || | ||| Sbjct 566 TCCTCGCTGTCATCAATGGCTATC----TGGGCGACCGCGGCCTGTCGCTGCGCCAGGGC 621 Query 9483 ACGCTGGTGGATGCGACGATCTTCGAGGCTGCGCCGTCC-ACGAAGAAC---GCCGGGAA 9538 || | || ||||| ||| | || | || || | || | || |||||| | ||| || Sbjct 622 ACCATCGTCGATGCAACGCTGATCAATGC-GCCCAGTTCGACCAAGAACAAGGACGGCAA 680 Query 9539 GAGCCGTGACCCGGAGATGCATCAGACGAAGAAGGGCAACGACTGGTATTTCGGCATGAA 9598 | || |||||||| ||||| ||||| |||||||| ||| | | ||||| |||||||| Sbjct 681 GCGC---GACCCGGAAATGCACCAGACCAAGAAGGGAAACCAGTATTATTTTGGCATGAA 737 Query 9599 GGCCCATGTCGGCGTCGACGCCGACTCGGGTCTGGTGCATAGCGTGGTCACCACGGCGGC 9658 |||||| |||||| ||| | ||| |||||||||||||| ||||| || ||||||||| Sbjct 738 GGCCCACATCGGCGCCGATGACGAATCGGGTCTGGTGCACAGCGTAGTGGGCACGGCGGC 797 Query 9659 CAACGAGCCGGACGTATCGCAGGCCCACGCCCTGCTGCACGGTCATGAGCAGGAAGCGTT 9718 ||| | | |||| || | |||| || ||||||| || | || | | | | Sbjct 798 CAATGTGGCGGATGTCACCCAGGTGGACAAATTGCTGCATGGCGACGAAAACGTGGTCTG 857 Query 9719 TGGCGATGCGGGCTACACCGGCGTGGACAAGCGCGAGGAG-ATGAAGGGCAAGACGGTGA 9777 | |||||| ||||||||||| || || ||||| ||| ||||||| | || || | Sbjct 858 CGCCGATGCAGGCTACACCGGTGTCGAAAAGCGGCCCGAGCATGAAGGACGTGA-AGTTA 916 Query 9778 AGTGGCACGTGGCGCTCAAG-CGCGG-------AAAGATCAGGGCGATGCAGGAAGGTCC 9829 ||||| |||||| || | ||| | ||| | | |||| ||| | Sbjct 917 TCTGGCAGGTGGCG-GCACGCCGCAGCACCTACAAAAAAC---TCGAT-----AAGCGCA 967 Query 9830 GC-TGAAGGACCTCGTGATCGCGGTCGAGCGAA----CCAAGGCGCAGATCCGCGCCCGG 9884 || || | || | | ||| || ||| ||||||| ||| | |||||| | Sbjct 968 GCGTGCTGTACAAAGCCA-AGCGCAAGATTGAAAAGGCCAAGGCTCAGGTGCGCGCCAAG 1026 Query 9885 GTCGAGCATCCGTTTCATGTCGTGAAGAACCTGTTTCGTCATCGCAAGGTGCGCTACAAG 9944 |||||||||||||| | || | ||| || ||| || | ||||||||||| Sbjct 1027 GTCGAGCATCCGTTCCGGGTAATCAAGCGCCAGTTCGGTTACACCAAGGTGCGCTTTCGC 1086 Query 9945 GGTCTAGCCAGGAACACGGCACAGCTGTTCAGTCTGTTCGCGCTGGCGAACCTGGTGATC 10004 || | |||| |||||||| || ||| | | |||||||| ||| |||||||| ||| Sbjct 1087 GGCTTGGCCAAAAACACGGCGCAACTGGTGACACTGTTCGCTCTGTCGAACCTGTGGATG 1146 Query 10005 GCG 10007 ||| Sbjct 1147 GCG 1149 >seq1317 Length=616 Score = 100 bits (110), Expect = 7e-17 Identities = 121/165 (73%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 9588 TTCGGCATGAAGGCCCATGTCGGCGTCGACGCCGACTCGGGTCTGGTGCATAGCGTGGTC 9647 |||||||||||||| || |||| ||||| | || ||||| ||||||| |||||||| Sbjct 614 TTCGGCATGAAGGCGCACATCGGTGTCGATGATGAGTCGGGCTTGGTGCACAGCGTGGTG 555 Query 9648 ACCACGGCGGCCAACGAGCCGGACGTATCGCAGGCCCACGCCCTGCTGCACGGTCATGAG 9707 |||||||||||||| | | || || | |||| | | ||||||||||| ||||| Sbjct 554 GGCACGGCGGCCAACGTGGCCGATGTCACCCAGGTCGATAAGCTGCTGCACGGCGATGAG 495 Query 9708 CAGGAAGCGTTTGGCGATGCGGGCTACACCGGCGTGGACAAGCGC 9752 | | || ||| ||||| ||||||||||| || || ||| Sbjct 494 AACATGGTCGGTGCCGACGCGGGTTACACCGGCGTCGAGAAACGC 450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 119022611264424