Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_015266.1 Length=40555 Score E Sequences producing significant alignments: (Bits) Value seq1445 365 1e-96 >seq1445 Length=14432 Score = 365 bits (404), Expect = 1e-96 Identities = 947/1420 (67%), Gaps = 50/1420 (4%) Strand=Plus/Minus Query 29817 CTATATCGCGATCGACACGACGGGCATGGGGCAGGGCGTCTATCAGCTCGTGCGGAAGTT 29876 ||| |||| |||||| | || |||| ||| ||||| ||||| ||| | |||| Sbjct 13171 CTACATCGGGATCGATATCACCGGCACGGGTTCCGGCGTGGCGCAGCTGGTGAAGCAGTT 13112 Query 29877 CTACCCGGCGGCCGTTGCATTGAACTACTCGCCCGAGGTCAAAACTCGCCTTGTGCTGAA 29936 || |||| | | || | |||||| ||||| |||||||| ||||| |||||||| Sbjct 13111 CTTCCCGAACATCACCACGTTCAGCTACTCACCCGAAGTCAAAACCCGCCTGGTGCTGAA 13052 Query 29937 GGGGCAATCCGTCATCCGCAACGGCCGCCTGCAATTCGACGCGGGATGGACCGACCTGGC 29996 || | ||||||| |||||| | ||| | ||||| ||||| ||||| || |||| Sbjct 13051 GGCTTACGACGTCATCAAAAACGGCAGGCTGGAGTTCGATGCGGGCTGGACGGATATGGC 12992 Query 29997 CGCGGCGTTCATGGGAATCAAACAGACCATGACGGCGAGCGGCCGCCACGCAACGTACAC 30056 | | || |||| ||| | || || || || ||| ||| || ||||| Sbjct 12991 GCAGTCATTGATGGCTATCCGCAAAACAATCACCGCCTCCGGGCGCATGTTCACTTACAC 12932 Query 30057 CGCCGACCGCAACGAAGAGACGGGCCACGCCGACCTGGCATGGGC-CTGCCTGCACGCGA 30115 |||| |||| || ||||||||||| |||||||| || ||||| ||| | |||||| Sbjct 12931 GGCCGGTCGCACAGACGAGACGGGCCATGCCGACCTAGCGTGGGCGCTGT-TCCACGCGC 12873 Query 30116 TCGACCGCGAACCGCTCGCCGGC--GGCGACATCAATTCTTCATCTTTCACGGAGTTCTA 30173 | || |||||| || | || | | || | | | | ||| | ||||| ||| Sbjct 12872 TGCACAACGAACCCCTTGAAGGGCAGACCACGGCGAA-CACCGGATTT-ATGGAGTCCTA 12815 Query 30174 TTCATGAGCA------Agcgccgatcgc-gcgcgccgcgcacgttc-gcggcc----gcg 30221 | ||||||| ||||| || | | || ||| | || || || || | Sbjct 12814 CTGATGAGCAGACGTAAGCGCGGAACCCAGCTGGCCAC---CGCTCAGCCACCCGTTGAA 12758 Query 30222 ccggattcgggcgccgccggca-ccgcgccggcgcgcgccgAGGTCTTCACCTTCGACGA 30280 ||||| | |||||| | ||| ||||| || | ||||| |||| || Sbjct 12757 GGGGATTTGCT-GCCGCCTGAGTCCGGGCCGGTT------GAAGCGTTCACTTTCGGTGA 12705 Query 30281 TCCCACGCCGGTCATGAACCGCGCCGAGATTCTCGACTACGTCGAATGCTGGTCGAACGG 30340 |||| | || || || | || ||||| ||||||||| | || |||||| | || || Sbjct 12704 TCCCGCTCCCGTGTTGGATAGCCGGGAGATCCTCGACTACCTGGAGTGCTGGGCCAATGG 12645 Query 30341 CGATTGGTTCGAGCCGCCCGTCAGCTTCGCCGGCCTGGCGAAATCGTTCCGCGCTAGCAC 30400 | |||||| || | || | | | | ||||||||||||| || ||| || ||| Sbjct 12644 CCGTTGGTTTGAAACACCGATGTCCATGGACGGCCTGGCGAAAACGACCCGGGCCAGCGT 12585 Query 30401 GCACCACAGCTCCGCGCTGTACTTCAAGGCGAACGTGCTGGCGTCGACGTTCCGGCCTCA 30460 | ||| | || | |||| |||||||| ||| |||| || |||||| || || Sbjct 12584 GTACCTCCAGTCGG-GCTGAACTTCAAGCGCAACATGCTTGCCCGCACGTTCGTTCCCCA 12526 Query 30461 CAGGTGGCTATCCCGGCATGCGTTCGAGCGATGGGCGCTCGACTTCCTGACGTTCGGCAA 30520 | || | | || || || || |||| | || || |||| || || ||||| Sbjct 12525 CCGGCTGTTGAGTCGCCAAGCCTTTGAGCAGTTCGCCCTGGACTGGCTCTGGTGTGGCAA 12466 Query 30521 CGGCTACCTGGAACGCCGCCGCAATCAGCTCGGCGACACGCTGCGGCTCGAACCGGCCCT 30580 | ||||||||||| ||| ||| |||| || |||| || | || || | || Sbjct 12465 CTGCTACCTGGAAAAGCGCAACAACATGCTCCGCAACACCATGGGCCTGCTGCCTCCACT 12406 Query 30581 GGCCAAATACACGCGGCGCAAGGCCGATTTCAGTGG----CTTTGTGTACGTGAACGGCT 30636 ||| || |||| ||| || | || || ||| || | | ||| |||| Sbjct 12405 GGCGAAGTACATGCGCCGGGGTGTGGA---CA-TGGAGACCTATTACCAGGTGCGTGGCT 12350 Query 30637 GGCAGGACAAGCACGAGTTCGAGCCGGGCAGCGTGTTCCAGCTCATGCGAC-CGGACATC 30695 || ||||| | || || || | || || | | ||| || |||| | || ||| Sbjct 12349 GGAAGGACGAACATGAATTTGCCCCCGGTTCGATCTGCCA-CTTGCGCGAGGCCGATATC 12291 Query 30696 AACCAGGAGGTGTACGGCCTGCCCGAATATCT--CAGCTCGCTTCACTCGGCCTGGCTGA 30753 |||||||| | ||||||||||| || | || |||| ||| || || ||| | Sbjct 12290 AACCAGGAAATCTACGGCCTGCCGGAGTGGCTGGCAGC--GCTGCAAAGCGCACTGCTCA 12233 Query 30754 ACGAGTCGTCGACGCTGTTCCGGCGGAAGTATTACGAAAACGGTAGCCACGCCGGCTTCA 30813 ||||| | |||||||||||||| ||||| ||| | ||||| ||||| ||||| |||| Sbjct 12232 ACGAGAGCGCCACGCTGTTCCGGCGCAAGTACTACAACAACGGCAGCCATGCCGGTTTCA 12173 Query 30814 TCCTCTACATGACCGACGCGGCGCAGAAGCAGGAGGATGTCGACAACATGCGCACGGCGT 30873 | || |||||||||||||||||||||||| | ||||| ||||| ||||||| || Sbjct 12172 TTCTGTACATGACCGACGCGGCGCAGAAGGAAGAGGACATCGACTCACTGCGCACCGCAC 12113 Query 30874 TGAAGAACGCGAAGGGGCCGGGCAATTTCCGCAACGTGTTCATGTACGCGCCGGGCGGGA 30933 |||||||| |||| ||||| ||||| || |||||| |||| |||||||||||| || | Sbjct 12112 TGAAGAACTCGAAAGGGCCAGGCAACTTTCGCAACCTGTTTGTGTACGCGCCGGCAGGCA 12053 Query 30934 AAAAGGACGGTATCCAGCTCATCCCAGTGTCCGAGGTCGCGGCGAAGGACGAGTTCTTCA 30993 | || ||||| || ||||||||||| ||| |||||| ||||| |||||||| ||| | Sbjct 12052 AGAAAGACGGCATTCAGCTCATCCCGGTGAGCGAGGTTGCGGCCAAGGACGAATTCAGCT 11993 Query 30994 ACATCAAGAACGTGACGCGCGACGACCTGCTCGCCGCGCATCGCGTGCCGCCGCAACTGC 31053 ||||| ||| | | || ||||| |||||||| ||| ||| | || ||||| || Sbjct 11992 CGATCAAAAACATCAGCCGTGACGATCTGCTCGCGGCGTTGCGCATTCCACCGCAGTTGA 11933 Query 31054 TCGGTATCGTGCCGAGCAATTCGGGCGGGTTCGGCAC---GCCGGACACCGCGGCGCGCG 31110 | || ||||||||| || ||||||| || || | || ||| | || | | | Sbjct 11932 TGGGCATCGTGCCGCAGAACGCGGGCGGTTTTGGGTCGTTGCGGGAGGCTGCTGAG-GTT 11874 Query 31111 TGTTCGGTCGCAACGAAATCAAGCCGCTGCAGGCCCGCTTCGCCGAGCTGAACGACTGGC 31170 || |||| |||||| | ||||| ||||||| | | ||| || | ||||| |||| Sbjct 11873 TGGGCGGT--CAACGAGCTGGAGCCGTTGCAGGCGAGGCTGGCCCAGGTCAACGAGTGGC 11816 Query 31171 TCGGCGAAGAGGTCGTGTTGTTCGACGATTACGAGATTCC 31210 | || |||||||| || |||| | || | ||| |||| Sbjct 11815 TGGGTGAAGAGGTTGTCAGGTTCAAGGAGTTTGAGCTTCC 11776 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 129642430791996