Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_015273.1 Length=32317 Score E Sequences producing significant alignments: (Bits) Value seq1445 279 1e-70 >seq1445 Length=14432 Score = 279 bits (308), Expect = 1e-70 Identities = 887/1353 (66%), Gaps = 37/1353 (3%) Strand=Plus/Minus Query 26190 CAGCTCGTCAAACAGTTCTATCCGAGCGCGGTCGCGCTCAACTATTCGCCCGAAATCAAG 26249 ||||| || || ||||||| |||| | | || ||| ||| || |||||| |||| Sbjct 13128 CAGCTGGTGAAGCAGTTCTTCCCGAACATCACCACGTTCAGCTACTCACCCGAAGTCAAA 13069 Query 26250 GGGCGTCTCGTGCTTAAGGGCTTGTCG--GTGATCGGCAAGGGCCGGCTCGAATTCGATG 26307 || || ||||| |||| ||| || || ||| || ||| |||| || ||||||| Sbjct 13068 ACCCGCCTGGTGCTGAAGG-CTTA-CGACGTCATCAAAAACGGCAGGCTGGAGTTCGATG 13011 Query 26308 CCGGTTGGACAGACCTAGCGCAATCCTTCATGGCCATTCGGAAAACCATGACGGCGAGCG 26367 | || ||||| || | ||||| || || ||||| || || ||||| || || || || Sbjct 13010 CGGGCTGGACGGATATGGCGCAGTCATTGATGGCTATCCGCAAAACAATCACCGCCTCCG 12951 Query 26368 GCCGAAAGGTGACATACGAGGCGAGCCGCAGCGAGGAAACCGGCCACGCCGATCTAGCGT 26427 | || | | | || ||| ||| | |||| || || || ||||| ||||| ||||||| Sbjct 12950 GGCGCATGTTCACTTACACGGCCGGTCGCACAGACGAGACGGGCCATGCCGACCTAGCGT 12891 Query 26428 GGGCGTGCCTGCACGCGCTCGATAACGAGCCGCTAGA-GGGCACGACCGCAAACAATACC 26486 ||||| | |||||||| | ||||| || || || ||||| |||| | || ||| Sbjct 12890 GGGCGCTGTTCCACGCGCTGCACAACGAACCCCTTGAAGGGCA-GACCACGGCGAACACC 12832 Query 26487 GGCTTTATGGAGTTCTCTTAATGAGCAAGCGTAAGCAGCGCAGC--AACTATCACGCGTC 26544 || |||||||||| || | ||||||| ||||||| ||| | | | || | || Sbjct 12831 GGATTTATGGAGTCCTACTGATGAGCAGACGTAAGC-GCGGAACCCAGCTGGCCACCGCT 12773 Query 26545 GAGC-AC-----GACGCCG----GCGGCCACGTCGACGCCGGCGCGCGCCGAGGCCTTCA 26594 ||| || || | | || ||| | | || |||| || | || || |||| Sbjct 12772 CAGCCACCCGTTGAAGGGGATTTGCTGCCGCCT-GAGTCCGGGCCG-GTTGAAGCGTTCA 12715 Query 26595 CCTTCGACGATCCTGTGCCGGTGATGGATCGCGCCGAAATTCTTGACTACGTGCAAGCGT 26654 | |||| ||||| | || ||| ||||| || || || || |||||| || | | Sbjct 12714 CTTTCGGTGATCCCGCTCCCGTGTTGGATAGCCGGGAGATCCTCGACTACCTGGAGTGCT 12655 Query 26655 ATGCGATCGGCGATTGGTATGAGCCGCCGGTGTC-ATGGGCGGGCCTTGCAAAGACGTTT 26713 || | ||| ||||| ||| | ||| |||| |||| ||| ||| || || ||| Sbjct 12654 GGGCCAATGGCCGTTGGTTTGAAACACCGATGTCCATGGACGG-CCTGGCGAAAACGACC 12596 Query 26714 CGCGCCGGCGTGCATCACGGGTCGGCGATCTACTTCAAACGCAATGTG-TTGTCGTCGAC 26772 || ||| ||||| | | | ||||| | | ||||||| ||||| || ||| | | || Sbjct 12595 CGGGCCAGCGTGTACCTCCAGTCGG-GCTGAACTTCAAGCGCAACATGCTTGCCCGC-AC 12538 Query 26773 GTTCATCCCGCACAAGTTGCTCACGCGCGAAGAATTCGACAAGTGGGCGCTCGATTTCCT 26832 |||| | || ||| | || | | ||| ||| || || ||| || || || | || Sbjct 12537 GTTCGTTCCCCACCGGCTGTTGAGTCGCCAAGCCTTTGAGCAGTTCGCCCTGGACTGGCT 12478 Query 26833 CACGTTCGGCAATGGGTACATCGAGCGGCGAAAGGCAAGGATCGGCAATACGCTCGCGCT 26892 | || ||||| | ||| | || ||| || | | || |||| || | | || Sbjct 12477 CTGGTGTGGCAACTGCTACCTGGAAAAGCGCAACAACATGCTCCGCAACACCATGGGCCT 12418 Query 26893 CAAACGCGCGCCGTCGAAATNNNNNNNNNNNNNNNCCGACTTGCAACGCTTCGTGCAGCT 26952 | | | | |||| | ||| || | || ||| | Sbjct 12417 GCTGCCTCCACTGGCGAAGTACATGCGCCGGGGTGTGGACATGGAGACCTATTACCAGGT 12358 Query 26953 CAACGGCTATCAACAGATCGAATATGAGTTCGAGCCGGGTTCGGTGCATCACTTGATGGA 27012 |||| | | |||| |||| || | || |||||| | |||||| || Sbjct 12357 GCGTGGCTGGAAGGA---CGAACATGAATTTGCCCCCGGTTCGATCTGCCACTTGCGCGA 12301 Query 27013 ACCCGACATTAATCAAGAGGTGTACGGCTTGCCCGAATATCTCGGCGCGCTGCACTCGGC 27072 |||| || || || || | |||||| |||| || | || | |||||||| || Sbjct 12300 GGCCGATATCAACCAGGAAATCTACGGCCTGCCGGAGTGGCTGGCAGCGCTGCAAAGCGC 12241 Query 27073 ATGGTTGAACGAGTCGGCGACGCTCTTTCGTCGCAAGTATTACGAGAATGGATCGCACGC 27132 | | | |||||| || ||||| || || |||||||| ||| | || || || || Sbjct 12240 ACTGCTCAACGAGAGCGCCACGCTGTTCCGGCGCAAGTACTACAACAACGGCAGCCATGC 12181 Query 27133 CGGTTTCATCCTGTACATGACCGATGCGGCGCA-AAGTCAAAGCGATGTCGACAAGATGC 27191 ||||||||| |||||||||||||| |||||||| ||| | || || ||||| ||| Sbjct 12180 CGGTTTCATTCTGTACATGACCGACGCGGCGCAGAAGGAAGAG-GACATCGACTCACTGC 12122 Query 27192 GCGAGGCGTTGAAGAACAGCAAGGGGCCGGGGAATTTCCGAAACCTTTTCATGTACGCGC 27251 || || |||||||| || ||||| || || || || ||||| || ||||||||| Sbjct 12121 GCACCGCACTGAAGAACTCGAAAGGGCCAGGCAACTTTCGCAACCTGTTTGTGTACGCGC 12062 Query 27252 CGAACGGCAAGAAAGACGGCATCCAGCTCATTCCGGTTTCCGAGGTCACGGCGAAAGACG 27311 || ||||||||||||||||| |||||||| ||||| |||||| |||| || |||| Sbjct 12061 CGGCAGGCAAGAAAGACGGCATTCAGCTCATCCCGGTGAGCGAGGTTGCGGCCAAGGACG 12002 Query 27312 AGTTCTTCAACATCAAGAATGTCACGCGCGACGACTTGCTCGCGGCGCATCGCATCCCGC 27371 | ||| | ||||| || ||| || ||||| ||||||||||| ||||| || | Sbjct 12001 AATTCAGCTCGATCAAAAACATCAGCCGTGACGATCTGCTCGCGGCGTTGCGCATTCCAC 11942 Query 27372 CTCAGCTCATGGGGATCGTGCCGAGCAATACCGGCGGATTCGG--CGCAACGGACAAGGC 27429 | ||| | ||||| ||||||||| || | ||||| || || || ||| |||| Sbjct 11941 CGCAGTTGATGGGCATCGTGCCGCAGAACGCGGGCGGTTTTGGGTCGTTGCGG--GAGGC 11884 Query 27430 CGCCGAGGTGTTCGGC-GTGAATGAAATCGCGCCCCTGCAACGGCGCTTTGAACAGCTCA 27488 || ||||| || ||| || || || | | ||| |||| | | | | ||| ||| Sbjct 11883 TGCTGAGGT-TTGGGCGGTCAACGAGCTGGAGCCGTTGCAGGCGAGGCTGGCCCAGGTCA 11825 Query 27489 ACGAGTGGATCGGCGACGAGGTTGTGCGCTTCA 27521 |||||||| | || || |||||||| | |||| Sbjct 11824 ACGAGTGGCTGGGTGAAGAGGTTGTCAGGTTCA 11792 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 103283264396052