Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq221 178 1e-39 >seq221 Length=17580 Score = 178 bits (196), Expect = 1e-39 Identities = 367/538 (68%), Gaps = 20/538 (4%) Strand=Plus/Plus Query 154596 TGTGATATCACAGGGTTTGATTCTATATCATTACAACCTAACGCAGGATCACAGGGTGAG 154655 ||||| ||||| || |||| | ||| | ||||| || || || ||||| || || Sbjct 13443 TGTGAAATCACTGGCTTTGCCGATTGCTCACTCCAACCAAATGCCGGTTCACAAGGAGAA 13502 Query 154656 TATGCAGGACTGTTAGCAATCCAAGCATACCATCAAGGATCAGGAGATGATAAAAGAAAT 154715 ||||| || || | | ||| | ||||| |||| | ||| | | ||||| || Sbjct 13503 TATGCTGGTCTCATGGTCATCAGAAAATACCTCCAAGAAATTGGACAACACCAAAGAGAT 13562 Query 154716 GTATGTTTGATACCAGAGTCAGCACATGGAACTAATCCTGCTAGTGCTGTCATGGCAGGG 154775 | |||||||| |||| ||||| ||||| || ||||| |||||||| ||||||| || Sbjct 13563 ATTTGTTTGATTCCAGTTTCAGCTCATGGTACCAATCCAGCTAGTGCAGTCATGGTCGGT 13622 Query 154776 ATGAAAGTTGTAGGTGTCAAGTGTGATGATGATGGTAACATAGACATCAAAGATCTA-GA 154834 |||||||| || | ||| | |||||||| ||| || | || |||||||| | Sbjct 13623 ATGAAAGTAGTTGTCGTCGATTGTGATGAATTTGGAAATGTTGATCAAAAAGATCTCCGT 13682 Query 154835 GAAGAAAGC-----AATCATGA-ATACATTTGAACTGTCATGTATTATGATTACATACCC 154888 ||| ||||| ||| || |||| ||| | | | |||||||| || || Sbjct 13683 GAA-AAAGCCGAAAAATACAGAGATACCCTTG------CCGCTTTAATGATTACCTATCC 13735 Query 154889 ATCTACACATGGTGTATTTGAAACTAACATTAGACAGATATGTAAGATCG--TTCATGAC 154946 ||| || |||||||| |||||| || | | ||| |||| |||| | ||| | Sbjct 13736 ATCAACTCATGGTGTCTTTGAAG--AAGGTGCCAAAGAAATGTGCGATCTCATCCATCAA 13793 Query 154947 AATGGTGGTCAGGTATATCTTGATGGAGCAAATCTAAATGCACAGGTAGGACTAGCAAAA 155006 | |||||||| || ||| | ||||| || || | ||||| || || || || Sbjct 13794 TACGGTGGTCAAGTTTATATGGATGGTGCCAACATGAATGCTCAAGTTGGTTTATGTCGT 13853 Query 155007 CCATGTGAGTAT-GGTGCAGATGTATGTCATCTAAACTTACATAAAACATTCTGTATTCC 155065 ||| |||| ||| ||||| ||||| |||||||| || | || || || ||||||||||| Sbjct 13854 CCAGGTGA-TATCGGTGCCGATGTCTGTCATCTCAATCTTCACAAGACTTTCTGTATTCC 13912 Query 155066 ACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATAGGTGTAGCAAAACATCTCACACCA 155123 |||||| ||||| || ||||| | ||||| || |||| || |||||| | ||| Sbjct 13913 ACATGGTGGTGGTGGCCCTGGAATGGGTCCAATTTGTGTTGCCTCCCATCTCGCTCCA 13970 Score = 120 bits (132), Expect = 4e-22 Identities = 198/284 (70%), Gaps = 4/284 (1%) Strand=Plus/Plus Query 153143 TGAACATCAAGCACTAGCAGAATTAAAAAATATAGCAAAAGCAAACAAAGTAAAACCTAG 153202 |||||||||| | || ||||||||| | | |||||| |||||| | | | Sbjct 11936 TGAACATCAATTATTACAGGAATTAAAAGAATTGGCAAAACAAAACAAGATCTATAAT-- 11993 Query 153203 TCTTATA--GGTCAAGGATACTATGGAACCATTACACCCCCAGTCATACAGCGAAACGTT 153260 || |||| ||| || |||||| ||||| ||| | || || || |||| || Sbjct 11994 TCATATATCGGTATGGGTTACTATAACACCATCGTACCTGCTGTAATCCAAAGAAATATT 12053 Query 153261 CTTGAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGA 153320 | |||||||| | |||||||| | |||||||| || ||||| || || |||| || Sbjct 12054 TTGGAGAATCCAGGATGGTACACTCCATACACTCCATACCAAGCAGAAATTGCTCAAGGT 12113 Query 153321 AGATTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTTACAGGATTACCAATA 153380 | |||||| |||| || |||| |||||| | | | || | || |||||| ||| Sbjct 12114 CGTTTGGAATCTTTGTTGAATTTCCAAACTATGGTTTCCGATATGACTGGATTAAAAATG 12173 Query 153381 GCAAACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGC 153424 ||||| || ||||| || |||||||||||||| || || ||||| Sbjct 12174 GCAAATGCCTCTCTTTTGGATGAAGCAACTGCTGCTGCCGAAGC 12217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579156514996160