Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq221 178 2e-39 seq2235 170 2e-37 >seq221 Length=17580 Score = 178 bits (196), Expect = 2e-39 Identities = 367/538 (68%), Gaps = 20/538 (4%) Strand=Plus/Plus Query 159271 TGTGATATCACAGGGTTTGATTCTATATCATTACAACCTAACGCAGGATCACAGGGTGAG 159330 ||||| ||||| || |||| | ||| | ||||| || || || ||||| || || Sbjct 13443 TGTGAAATCACTGGCTTTGCCGATTGCTCACTCCAACCAAATGCCGGTTCACAAGGAGAA 13502 Query 159331 TATGCAGGACTGTTAGCAATCCAAGCATACCATCAAGGATCAGGAGATGATAAAAGAAAT 159390 ||||| || || | | ||| | ||||| |||| | ||| | | ||||| || Sbjct 13503 TATGCTGGTCTCATGGTCATCAGAAAATACCTCCAAGAAATTGGACAACACCAAAGAGAT 13562 Query 159391 GTATGTTTGATACCAGAGTCAGCACATGGAACTAATCCTGCATCAGCAGTGATGGCAGGG 159450 | |||||||| |||| ||||| ||||| || ||||| || ||||| |||| || Sbjct 13563 ATTTGTTTGATTCCAGTTTCAGCTCATGGTACCAATCCAGCTAGTGCAGTCATGGTCGGT 13622 Query 159451 ATGAAAGTTGTAGGTGTCAAGTGTGATGATGATGGCAACATAGACATCAAAGATCTA-GA 159509 |||||||| || | ||| | |||||||| ||| || | || |||||||| | Sbjct 13623 ATGAAAGTAGTTGTCGTCGATTGTGATGAATTTGGAAATGTTGATCAAAAAGATCTCCGT 13682 Query 159510 GAAGAAAGC-----AATCATGA-ATACATTTGAACTGTCATGTATTATGATTACATATCC 159563 ||| ||||| ||| || |||| ||| | | | |||||||| ||||| Sbjct 13683 GAA-AAAGCCGAAAAATACAGAGATACCCTTG------CCGCTTTAATGATTACCTATCC 13735 Query 159564 ATCTACACATGGTGTATTTGAAACAAACATCAGACAGATATGTAAGATTG--TTCATGAG 159621 ||| || |||||||| |||||| || | | ||| |||| ||| | ||| | Sbjct 13736 ATCAACTCATGGTGTCTTTGAAG--AAGGTGCCAAAGAAATGTGCGATCTCATCCATCAA 13793 Query 159622 AATGGTGGTCAGGTATATCTTGATGGTGCAAATCTAAATGCACAGGTAGGTCTAGCAAAA 159681 | |||||||| || ||| | |||||||| || | ||||| || || ||| || Sbjct 13794 TACGGTGGTCAAGTTTATATGGATGGTGCCAACATGAATGCTCAAGTTGGTTTATGTCGT 13853 Query 159682 CCATGTGACTAT-GGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGTATTCC 159740 ||| |||| ||| ||||| ||||| |||||||| || | || ||||| ||||||||||| Sbjct 13854 CCAGGTGA-TATCGGTGCCGATGTCTGTCATCTCAATCTTCACAAGACTTTCTGTATTCC 13912 Query 159741 ACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATTGGTGTAGCAAAACATCTCACACCA 159798 |||||| ||||| || ||||| | ||||| ||| |||| || |||||| | ||| Sbjct 13913 ACATGGTGGTGGTGGCCCTGGAATGGGTCCAATTTGTGTTGCCTCCCATCTCGCTCCA 13970 Score = 109 bits (120), Expect = 6e-19 Identities = 196/286 (69%), Gaps = 8/286 (3%) Strand=Plus/Plus Query 157818 TGAGCATCAAGCATTGGCAGAGTTAAAAAATATAGCAAAAGCAAACAA----TGTAAAAC 157873 ||| |||||| ||| || |||||| | | |||||| |||||| | ||| | Sbjct 11936 TGAACATCAATTATTACAGGAATTAAAAGAATTGGCAAAACAAAACAAGATCTATAATTC 11995 Query 157874 CTAGTCTTATAGGTCAAGGATACTATGGAACCATCACACCCCCAGTCATACAGCGAAACG 157933 || ||| ||| || |||||| |||||| ||| | || || || |||| Sbjct 11996 ATA----TATCGGTATGGGTTACTATAACACCATCGTACCTGCTGTAATCCAAAGAAATA 12051 Query 157934 TTCTTGAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGG 157993 || | |||||||| | |||||||| | |||||||| || ||||| || || |||| | Sbjct 12052 TTTTGGAGAATCCAGGATGGTACACTCCATACACTCCATACCAAGCAGAAATTGCTCAAG 12111 Query 157994 GAAGATTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTCACAGGACTACCGA 158053 | | |||||| |||| || |||| |||||| | | | || | || ||| || | Sbjct 12112 GTCGTTTGGAATCTTTGTTGAATTTCCAAACTATGGTTTCCGATATGACTGGATTAAAAA 12171 Query 158054 TAGCAAACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGC 158099 | ||||| || ||||| || |||||||||||||| || || ||||| Sbjct 12172 TGGCAAATGCCTCTCTTTTGGATGAAGCAACTGCTGCTGCCGAAGC 12217 >seq2235 Length=10344 Score = 170 bits (188), Expect = 2e-37 Identities = 272/386 (70%), Gaps = 6/386 (2%) Strand=Plus/Minus Query 159409 TCAGCACATGGAACTAATCCTGCATCAGCAGTGATGGCAGGGATGAAAGTTGTAGGTGTC 159468 || || |||||||| ||||| || || |||| ||||| || |||||| |||| || Sbjct 7489 TCTGCTCATGGAACCAATCCGGCTTCTGCAGCAATGGCCGGAATGAAAATTGTGATCGTT 7430 Query 159469 AAGTGTGATGATGATGGCAACATAGACATCAAAGATCTAGAGAAGAAAGCAATCATGA-- 159526 || | | ||| | || || ||||| | | || || | ||||| || || Sbjct 7429 AAATCTCTTGAAAACGGAAATATAGATGTAGAGGACCTTAAAGCTAAAGCC--CAGGAGC 7372 Query 159527 ATACATTTGAACTGTCATGTATTATGATTACATATCCATCTACACATGGTGTATTTGAAA 159586 ||| | ||| || || ||| | ||| | || || || ||||| |||||||| || ||| Sbjct 7371 ATAAAAATGAGCTTTCCTGTTTAATGGTCACTTACCCTTCTACCCATGGTGTGTTCGAAG 7312 Query 159587 CAAACATCAGACAGATATGTAAGATTGTTCATGAGAATGGTGGTCAGGTATATCTTGATG 159646 || ||| | | || || || || | ||||| || || || ||||| ||| | |||| Sbjct 7311 AAAGCATTATTGACATCTGCAACATCATCCATGAAAACGGAGGACAGGTTTATATGGATG 7252 Query 159647 GTGCAAATCTAAATGCACAGGTAGGTCTAGCAAAACCATGTGACTAT-GGTGCAGATGTA 159705 |||||||| | |||||||| |||||| || | | || | | ||| ||||| || || Sbjct 7251 GTGCAAATATGAATGCACAAGTAGGTTTAACCAGTCCCGGACA-TATCGGTGCTGACGTC 7193 Query 159706 TGTCATCTAAACTTACATAAGACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTA 159765 ||||| || ||| | || || || || || |||||||| || ||||| ||||||||| | Sbjct 7192 TGTCACCTGAACCTGCACAAAACTTTTTGCATTCCACACGGTGGTGGTGGTCCTGGCATG 7133 Query 159766 GGTCCTATTGGTGTAGCAAAACATCT 159791 |||||||| ||||| |||||||| || Sbjct 7132 GGTCCTATCGGTGTTGCAAAACACCT 7107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587994056124640