Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_015286.1 Length=175230 Score E Sequences producing significant alignments: (Bits) Value seq2234 95.1 1e-14 seq1686 95.1 1e-14 >seq2234 Length=2923 Score = 95.1 bits (104), Expect = 1e-14 Identities = 107/139 (77%), Gaps = 6/139 (4%) Strand=Plus/Plus Query 22483 TAGCTCAGTT-GGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAGGAGTTCGAGTCTCCTA 22541 |||| |||| ||||| |||||||||||| ||||||||||||||||||||| || ||| Sbjct 9 TAGCGCAGTCCGGTAGCGCGCCTGCTTTGGGAGCAGGATGTCAGGAGTTCGAATCCCCTT 68 Query 22542 TTCTCCACTCAAT---CCTCTTTAGCTCAG-CGGTAGAGCGGTTGACTGTTAATCAATTG 22597 | | || || || ||||||||| |||||||| |||| || |||| |||||| Sbjct 69 ACCCCGACCATATTTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGGCTTTTAACCAATTG 128 Query 22598 GTCCCTGGTTCG-ATCCCA 22615 ||| |||||| |||||| Sbjct 129 GTCGTAGGTTCGAATCCCA 147 >seq1686 Length=12041 Score = 95.1 bits (104), Expect = 1e-14 Identities = 107/139 (77%), Gaps = 6/139 (4%) Strand=Plus/Plus Query 22483 TAGCTCAGTT-GGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAGGAGTTCGAGTCTCCTA 22541 |||| |||| ||||| |||||||||||| ||||||||||||||||||||| || ||| Sbjct 10729 TAGCGCAGTCCGGTAGCGCGCCTGCTTTGGGAGCAGGATGTCAGGAGTTCGAATCCCCTT 10788 Query 22542 TTCTCCACTCAAT---CCTCTTTAGCTCAG-CGGTAGAGCGGTTGACTGTTAATCAATTG 22597 | | || || || ||||||||| |||||||| |||| || |||| |||||| Sbjct 10789 ACCCCGACCATATTTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGGCTTTTAACCAATTG 10848 Query 22598 GTCCCTGGTTCG-ATCCCA 22615 ||| |||||| |||||| Sbjct 10849 GTCGTAGGTTCGAATCCCA 10867 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560553522917600