Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_015295.1 Length=47279 Score E Sequences producing significant alignments: (Bits) Value seq915 390 3e-104 seq2461 113 1e-20 seq6260 87.8 5e-13 >seq915 Length=38681 Score = 390 bits (432), Expect = 3e-104 Identities = 761/1104 (69%), Gaps = 25/1104 (2%) Strand=Plus/Plus Query 29850 ACTGCGTTAACGAGCTGTGCTTCATAGCCCAAAGTGCCGTTTACAAGGTGTGTTTTTTGA 29909 || ||||| || ||||| |||||||| || | |||||||| || | |||||||| || Sbjct 3597 ACCGCGTTTACCAGCTGCGCTTCATAACCAAGCGTGCCGTTAACCACATGTGTTTTCTGC 3656 Query 29910 GCCACGGCGAAGGGATTCATTCCCCACTGCGCGGCCTGTAGCGCAACCGCCAGGCAATCA 29969 ||||| ||||| || ||||| ||||||||||| ||||| | | || |||||||| ||| Sbjct 3657 GCCACAGCGAACGGGTTCATGCCCCACTGCGCCGCCTGCATGGTCACAGCCAGGCAGTCA 3716 Query 29970 GCAGGCTTCCCGGCGAGGTGGGCGGGTACTGTTGTTCTGCCCTGCGCCATGACCTCGGC- 30028 |||||||| || || ||||| || || || || | | | | ||||| | || Sbjct 3717 GCAGGCTTTCCTGCCAGGTGCGCAGGAACGGTGGCCTTACTGTCAGCCATCAGGGTTGCG 3776 Query 30029 AAACGCCTGTAGTTTTTGCA-GTCCTGACGGGCTAAATATTGCCGCTTTTGTGTC---GG 30084 |||||| || | || | ||| | ||||| || |||||||| ||| | || Sbjct 3777 AAACGCACC-AGGCGGTCCATGCCCTCA-GGGCTGAAGATTGCCGCAGCGGTGCCAACGG 3834 Query 30085 CCTCATTAGCCGGAC-TGTGAA--CAATTTCAGTGCTCATACGTA---ATCCTTTTTCTT 30138 | || | | ||||| | || || |||||||||||| ||||| ||| Sbjct 3835 TTGCGCCAGGCTGCGATGTGATTGCGATGTCGTTGCTCATACGTACATATCCTGTTTGCG 3894 Query 30139 CGCCCAGGCTGGGCGTGTGATTTCTTCAATGCCGCCCCA---GCTATCACTAACCCGGCA 30195 ||||| | |||||| |||| ||||| || ||||| || | ||| || |||| Sbjct 3895 TGCCCACTCGGGGCGTTTGATAATTTCAAATCCACCCCATTCGCCAG-ACTCAC--GGCA 3951 Query 30196 TTCGTGGTATGTGTTCAGACTGTTGCGGAATAAATCATGGCCTGTTGCCACATCATCCGC 30255 | |||||| || |||||| |||||| | |||| || | | || || | || Sbjct 3952 CTGGTGGTAGGTATTCAGATCCCGGCGGAACAGTGCATGCCCGGCGTCAACGTCCTGTGC 4011 Query 30256 AGCGAGCTGGAACGTCCGCACGGGATATCGACCGCAGTTGATCGTCTCGCTCACGGCAAT 30315 | | || | ||| ||||| || || || ||||||| ||| || |||||||| || | Sbjct 4012 ATCCAGTTCGAAAACGCGCACCGGGTAGCGGCCGCAGTCGATGGTTTCGCTCACTGCCAG 4071 Query 30316 AAAAATAAACATGGGATATTCGCCGAAGTGCTTCAGATACCCTTCGCGGTACATGGCGTC 30375 |||| || | | || ||| | || | | |||||||||||||||||||| Sbjct 4072 GAAAAAGAATCCGTGCGGCTCACCGGTGGTCTGCTGCGCGCCTTCGCGGTACATGGCGTC 4131 Query 30376 TTGCATGTGATAGCGGAATTCTTCGACATGTCGCGGGAATCGCTCCATATCTGCAACTTT 30435 || | ||| || |||||||| |||| || || | ||| |||||||| || ||||| || Sbjct 4132 CTGAACGTGGTACCGGAATTCCTCGATGTGGCGGGAGAACCGCTCCATGTCCGCAACCTT 4191 Query 30436 TTTCACGTCAACAACAACTGGCTGGCTAGTTAGAAACTTATCCGGCCTGAAT-CTGCACA 30494 || ||||| | | ||| || || | | || ||||||||| | |||| | ||||| Sbjct 4192 CTTTACGTCCAGCAGAACCGGATGATTCTTCAGGCGCTTATCCGGGC-GAATGCGGCACA 4250 Query 30495 GCTCCCCGGTTTCGTCATCATTCCAGTAGATAGAAGACTCGCAATGCCCGTCTGCCTCCA 30554 |||| |||||||| ||| |||||||| || | ||||| || || ||||| | Sbjct 4251 GCTCTCCGGTTTCCGAATCCGTCCAGTAGTGCGACGCTTCGCAGAAACCTTCCGCCTCAA 4310 Query 30555 GCAACCACCGTGCGGCGGGGTGGGATAGAGCACTCTCTCGCATTAACTTTAGCTTTATGC 30614 | | ||| || || || || |||| | || || || ||||| | || ||||| || Sbjct 4311 GAAGCCAGCGCGCCGCCGGATGGGCCATCGCGCTGTCACGCATAAGATTCAGCTTGCGGC 4370 Query 30615 CTTGCTCTGCATCCATAACCGTCATTCCAGATCTT-TCACAATCCCGGAGAAACCTGGCT 30673 | || || ||||||||||||||||| || || || || ||| || ||| ||| Sbjct 4371 CCTGTTCGGCATCCATAACCGTCATGCC-CATGTTCTCGACATCTTTCAGGAACGCTGCT 4429 Query 30674 TCTTCTTCCTTTCCTGC-GCTGGTCCGCCTGTTTACGTCTGGCCCCACAACAAAACGCTT 30732 || || || ||||| || ||| || || | ||| | | ||| |||| | |||||||| Sbjct 4430 TCATCCTCTTTTCCGGCTGCT-GTGCGGCGGTTGAACTGCGGCGCCACGATGAAACGCTT 4488 Query 30733 ATCGAACTCTTCCGGCTCCAGCAGCAGGCAGTGCAGGGCAGTACCCATATCCAGCGCTTT 30792 ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| Sbjct 4489 ATCGAACTCTTCCGGCTCCAGCAGCAGGCAGTGCAGGGCGGTGCCCATATCCAGCGCTTT 4548 Query 30793 CATCTTTTCAGTATCTACTGGCGCGCTTTTTCGCCACTTATATACTGCCGGGTTTGTAGC 30852 || |||||| || || || ||||| ||| |||| | | |||||| | || Sbjct 4549 CAGCTTTTCGGTGTCGACCGGCGCTGATTTCTGCCATTGCAGCAGGGCCGGGCTCAACGC 4608 Query 30853 TATATCATCGAGCTGGGACTTGCTTACACCTGCCCCAGAATGATAATCCTCGTTAGAAAT 30912 | ||| ||||| ||||| || || || | || || || ||||||||||| || Sbjct 4609 AACCATATCCAGCTGCGACTTACTCACGCCGTCTCCGGAGTGGTAATCCTCGTTGCTGAT 4668 Query 30913 GTCGTAATAAATGCCAGGTTCCAT 30936 |||| | ||||| || || | ||| Sbjct 4669 GTCGAAGTAAATTCCTGGCTTCAT 4692 >seq2461 Length=11543 Score = 113 bits (124), Expect = 1e-20 Identities = 145/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 37597 CTGGCGAAAGAGTTACGCTGCCCGGTTATAGCATTGTCTCAGTTGAACCGTAATTTGGAG 37656 ||||| || || || ||||||||| | || |||| ||| | ||||| | | ||| Sbjct 8657 CTGGCCAAGGAATTCAACTGCCCGGTGGTTGCCCTGTCGCAGCTCAACCGATCTCTTGAG 8716 Query 37657 CAGCGTGCAAACAAGCGACCGTGCAATGCCGACTTACGTGAGTCGGGCGTAATCGAGCAG 37716 |||||| | ||||| || ||| ||| ||||||| || || || || | ||||||||| Sbjct 8717 CAGCGTCCGAACAAACGCCCGATCAACTCCGACTTGCGGGAATCCGGAGCGATCGAGCAG 8776 Query 37717 GAAGCTGATGTGATTTTCATGGTTTATCGCGACGAGAAGTACAACCCGCAGACAGAGATG 37776 || ||||| ||||| | | || || || |||||| ||| ||||| |||| ||| Sbjct 8777 GATGCTGACGTGATCATGTTCGTATACCGGGACGAGGTGTATCACCCGGAGACCGAGCAT 8836 Query 37777 AAAGGCGTCACTGAAATCAT 37796 |||||| || |||||||||| Sbjct 8837 AAAGGCATCGCTGAAATCAT 8856 >seq6260 Length=2033 Score = 87.8 bits (96), Expect = 5e-13 Identities = 127/177 (72%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 37598 TGGCGAAAGAGTTACGCTGCCCGGTTATAGCATTGTCTCAGTTGAACCGTAATTTGGAGC 37657 |||| |||||||| ||||| || || || | || |||||| ||| | | |||| Sbjct 1699 TGGCCAAAGAGTTCAATTGCCCCGTCATCGCGCTATCGCAGTTGTCCCGCCAGTGTGAGC 1640 Query 37658 AGCGTGCAAACAAGCGACC-GTGCAATGCCGACTTACGTGAGTCGGGCGTAATCGAGCAG 37716 |||| | |||||||| || ||| || || ||||| || ||||| |||| ||||||||| Sbjct 1639 AGCGGCCCAACAAGCGCCCTGTG-AACGCAGACTTGCGGGAGTCCGGCGCGATCGAGCAG 1581 Query 37717 GAAGCTGATGTGATTTTCATGGTTTATCGCGACGAGAAGTACAACCCGCAGACAGAG 37773 || || || | || | | || ||||| |||||| ||||||||| | || ||| Sbjct 1580 GACGCGGACATCATCATGTTCGTCTATCGAGACGAGGTCTACAACCCGGACACTGAG 1524 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151157244441708