Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq982 161 2e-34 seq322 161 2e-34 seq540 152 1e-31 seq391 136 9e-27 seq339 91.5 3e-13 >seq982 Length=41121 Score = 161 bits (178), Expect = 2e-34 Identities = 169/222 (76%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| ||||| | || | || ||||| || |||||||| || ||||| |||| | ||| Sbjct 2601 TCTAAGTCTGAGGACTAAATGGAGAGTTGATTCTTTTTGGATGTTGTAGTCGGATAAAGT 2660 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | |||||||| | || ||||| ||||| ||||||| |||||| || || || || || Sbjct 2661 ACGACCATCTTCTAATTGTTTACCGGCGAAAATAAGTCTTTGTTGATCAGGTGGGATACC 2720 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||||||||||||||| || |||||| || ||||||||||| |||| ||| ||||| | Sbjct 2721 TTCTTTGTCTTGAATCTTGGTCTTGACATTTTCAATGGTGTCAGAACCTTCAACTTCCAA 2780 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| | || || || ||||| || ||||| || | |||||| Sbjct 2781 GGTGATTGTTTTACCGGTCAAGGTCTTTACAAAAATTTGCAT 2822 Score = 152 bits (168), Expect = 1e-31 Identities = 167/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| ||||| | || | || ||||| || |||||||| || |||||||| | || || Sbjct 1917 TCTAAGTCTGAGGACTAAATGGAGAGTAGATTCTTTTTGGATGTTGTAATCAGAGAGGGT 1976 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | |||||||| | || ||||| ||||| ||||||| |||||| || || || || || Sbjct 1977 ACGACCATCTTCCAATTGTTTACCAGCGAAAATAAGTCTTTGTTGATCGGGTGGGATACC 2036 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 |||||||||||| || || ||||||||| ||||||||||| |||| ||| || || | Sbjct 2037 TTCTTTGTCTTGGATCTTGGTCTTGACGTTTTCAATGGTGTCTGAACCTTCTACCTCTAA 2096 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| | || || || ||||| || || || || | |||||| Sbjct 2097 GGTGATAGTTTTACCGGTCAAGGTCTTGACAAAAATTTGCAT 2138 Score = 150 bits (166), Expect = 4e-31 Identities = 155/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 || || || || || ||||| || ||||| |||| | ||| | |||||||| | || Sbjct 2164 TGGAGGGTTGATTCCTTTTGGATGTTGTAGTCGGATAAAGTACGACCATCTTCCAATTGT 2223 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 ||||| || |||||||||| ||||||||| || || || |||||||||||||| || || Sbjct 2224 TTACCGGCAAAGATAAGTCTTTGTTGGTCGGGTGGGATACCTTCTTTGTCTTGGATCTTG 2283 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 ||||||||| || |||||||| |||| ||| ||||| | ||| | || || || ||| Sbjct 2284 GTCTTGACGTTTTCGATGGTGTCAGAACCTTCGACTTCCAAGGTGATTGTTTTACCGGTC 2343 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 || || ||||| || | |||||| Sbjct 2344 AAGGTCTTTACAAAGATTTGCAT 2366 Score = 147 bits (162), Expect = 5e-30 Identities = 164/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981 |||||| | || | || || || || || |||||||| ||||| |||| | ||| | Sbjct 2376 GAGTCTAAGTACCAAATGGAGGGTTGATTCCTTTTGAATGTTGTAGTCGGATAAAGTACG 2435 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 |||||||| | || ||||| ||||| ||||||| |||||| || || || || ||||| Sbjct 2436 ACCATCTTCCAATTGTTTACCAGCGAAAATAAGTCTTTGTTGATCGGGTGGGATACCTTC 2495 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 ||||||||| || || |||||| || ||||||||||| |||| ||| ||||| | ||| Sbjct 2496 TTTGTCTTGGATCTTGGTCTTGACATTTTCAATGGTGTCAGAACCTTCAACTTCCAAGGT 2555 Query 195102 AACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | || || || ||||| || || || || | |||||| Sbjct 2556 GATAGTTTTACCGGTCAAGGTCTTGACAAAAATTTGCAT 2594 >seq322 Length=112280 Score = 161 bits (178), Expect = 2e-34 Identities = 158/204 (77%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 ||||| || || |||||||| || ||||| || | ||||| | |||||||| | || Sbjct 11207 TGAAGGGTAGATTCTTTTTGGATGTTGTAGTCAGAGAGAGTACGACCATCTTCTAATTGT 11148 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 ||||| || || ||||||| ||||||||| || || || |||||||||||||| ||||| Sbjct 11147 TTACCAGCAAAAATAAGTCTTTGTTGGTCGGGTGGGATACCTTCTTTGTCTTGGATTTTG 11088 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 |||||| || |||||||| || |||| ||| ||||| | ||||| || || || ||| Sbjct 11087 GTCTTGACATTTTCAATGGTATCAGAACCTTCAACTTCTAAGGTAATAGTTTTACCGGTC 11028 Query 195118 AAAGTTTTTACGAACACTTGCATT 195141 || || ||||| || | ||||||| Sbjct 11027 AAGGTCTTTACAAAGATTTGCATT 11004 Score = 149 bits (164), Expect = 1e-30 Identities = 166/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| ||||| | ||| | || ||||| || |||||||| || ||||| || | || || Sbjct 11682 TCTAAGTCTGAGAACTAAATGGAGAGTAGATTCTTTTTGGATGTTGTAGTCAGAGAGGGT 11623 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | || ||||| | || ||||| || || || |||| ||||||||| || || || || Sbjct 11622 ACGACCGTCTTCTAATTGTTTACCAGCAAAAATGAGTCTTTGTTGGTCGGGTGGGATACC 11563 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 |||||||||||| || || ||| || ||||||||||| || |||| ||| ||||| | Sbjct 11562 TTCTTTGTCTTGGATCTTGGTCTTTACATTCTCAATGGTATCAGAACCTTCAACTTCTAA 11503 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| || || || ||||| || ||||| || | |||||| Sbjct 11502 GGTAATAGTTTTACCGGTCAAGGTCTTTACAAAGATTTGCAT 11461 Score = 147 bits (162), Expect = 5e-30 Identities = 164/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981 |||||| | || | || ||||| || |||||||| || ||||| |||| | ||| | Sbjct 11451 GAGTCTGAGGACTAAATGGAGAGTTGATTCTTTTTGGATGTTGTAGTCGGATAAAGTACG 11392 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 |||||||| | || ||||| || || ||||||| |||||| || || || || ||||| Sbjct 11391 ACCATCTTCCAATTGTTTACCAGCAAAAATAAGTCTTTGTTGATCGGGTGGGATACCTTC 11332 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 ||||||||| ||||| || ||||| || |||||||| |||| ||| ||||| | ||| Sbjct 11331 TTTGTCTTGGATTTTGGTTTTAACGTTTTCGATGGTGTCAGAACCTTCAACTTCTAAGGT 11272 Query 195102 AACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || || || ||||| || || || || | |||||| Sbjct 11271 AATAGTTTTACCGGTCAAGGTCTTGACAAAAATTTGCAT 11233 Score = 145 bits (160), Expect = 2e-29 Identities = 154/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 || || || || |||||||| || ||||| || | ||||| | |||||||| | || Sbjct 11891 TGGAGTGTTGATTCTTTTTGGATGTTGTAGTCAGAGAGAGTACGACCATCTTCTAATTGT 11832 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 ||||| || || || |||| |||||| || || || || |||||||||||||| ||||| Sbjct 11831 TTACCAGCAAAAATGAGTCTTTGTTGATCGGGTGGGATACCTTCTTTGTCTTGGATTTTG 11772 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 ||||||||| |||||||| || |||| ||| ||||| | ||| | || || || ||| Sbjct 11771 GTCTTGACGTTTTCAATGGTATCAGAACCTTCTACTTCCAAGGTGATTGTTTTACCGGTC 11712 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 || || ||||| || | |||||| Sbjct 11711 AAGGTCTTTACAAAGATTTGCAT 11689 Score = 140 bits (154), Expect = 7e-28 Identities = 164/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| ||||| | || | || ||||| || |||||||| || ||||| || | || || Sbjct 12138 TCTAAGTCTGAGGACTAAATGGAGAGTTGATTCTTTTTGGATGTTGTAGTCAGAGAGGGT 12079 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | |||||||| | |||||||| || || ||||||| |||||| || || || || || Sbjct 12078 ACGACCATCTTCCAATTGCTTACCAGCAAAAATAAGTCTTTGTTGATCGGGTGGGATACC 12019 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| || ||||| || || |||||| || ||||||||||| || | ||| ||||| | Sbjct 12018 TTCCTTATCTTGGATCTTGGTCTTGACATTTTCAATGGTGTCAGAGCCTTCAACTTCTAA 11959 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| || || || ||||| || || || || | |||||| Sbjct 11958 GGTAATAGTTTTACCGGTCAAGGTCTTGACAAAAATTTGCAT 11917 >seq540 Length=89862 Score = 152 bits (168), Expect = 1e-31 Identities = 167/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||||||||| | ||| | || ||||| || || ||||| || || ||||| | || || Sbjct 84308 TCTGAGTCTGAGAACTAAATGGAGAGTTGATTCCTTTTGGATGTTATAATCAGAGAGGGT 84249 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | |||||||| | || ||||| || |||||||||| ||||||||| || || || || Sbjct 84248 ACGGCCATCTTCCAATTGTTTACCGGCAAAGATAAGTCTTTGTTGGTCGGGTGGGATACC 84189 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 |||||| ||||| ||||| |||||| || ||||||||||| |||| ||| ||||| | Sbjct 84188 TTCTTTATCTTGGATTTTGGTCTTGACATTTTCAATGGTGTCAGAACCTTCAACTTCTAA 84129 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || | || || || ||||| || || || || | |||||| Sbjct 84128 TGTGATAGTTTTACCGGTCAAGGTCTTAACAAAGATTTGCAT 84087 Score = 149 bits (164), Expect = 1e-30 Identities = 166/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| | ||| | ||| || || || || || |||||||| || |||||||| | || || Sbjct 84536 TCTTAATCTAAGAACGAGATGGAGGGTTGATTCTTTTTGGATGTTGTAATCAGAGAGGGT 84477 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | |||||||| | || ||||| || || ||||||| |||||| || || || || || Sbjct 84476 ACGACCATCTTCCAATTGTTTACCGGCAAAAATAAGTCTTTGTTGATCGGGTGGGATACC 84417 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 |||||| ||||| ||||| |||||| || ||||||||||| |||| ||| ||||| | Sbjct 84416 TTCTTTATCTTGGATTTTGGTCTTGACATTTTCAATGGTGTCAGAACCTTCAACTTCTAA 84357 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || | || || || ||||| ||||| || || | |||||| Sbjct 84356 TGTGATGGTTTTACCGGTCAAGGTTTTAACAAAAATTTGCAT 84315 Score = 145 bits (160), Expect = 2e-29 Identities = 155/205 (76%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 || || || || || ||||| || || ||||| | || || | |||||||| | || Sbjct 83833 TGGAGGGTTGATTCCTTTTGGATGTTATAATCAGAGAGGGTACGACCATCTTCCAATTGT 83774 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 ||||| || ||||| |||| ||||||||| || || || |||||||| ||||| ||||| Sbjct 83773 TTACCGGCAAAGATTAGTCTTTGTTGGTCGGGTGGGATACCTTCTTTATCTTGGATTTTG 83714 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 |||||| || ||||||||||| |||| ||| ||||| | || | || ||||| || Sbjct 83713 GTCTTGACATTTTCAATGGTGTCAGAACCTTCAACTTCTAATGTGATAGTTTTTCCGGTT 83654 Query 195118 AAAGTTTTTACGAACACTTGCATTT 195142 ||||| ||||| || | |||||||| Sbjct 83653 AAAGTCTTTACAAAAATTTGCATTT 83629 Score = 134 bits (148), Expect = 3e-26 Identities = 163/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| ||||| | || | ||||| || || |||||||| || || ||||| | || || Sbjct 84080 TCTAAGTCTGAGGACTAAATGAAGGGTTGATTCTTTTTGGATGTTATAATCAGAGAGGGT 84021 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | |||||||| | || ||||| || || ||||||| |||||| || || || || || Sbjct 84020 ACGACCATCTTCCAATTGTTTACCGGCAAAAATAAGTCTTTGTTGATCGGGTGGGATACC 83961 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 |||||| ||||| || || ||||||||| ||||||||||| || | || ||||| | Sbjct 83960 TTCTTTATCTTGGATCTTGGTCTTGACGTTTTCAATGGTGTCAGAGCCCTCAACTTCTAA 83901 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || | || || || ||||| ||||| || || | |||||| Sbjct 83900 TGTGATTGTTTTACCGGTCAAGGTTTTAACAAAAATTTGCAT 83859 >seq391 Length=66319 Score = 136 bits (150), Expect = 9e-27 Identities = 146/193 (76%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981 |||||| | ||| | || || || || || ||||| || |||||||| | ||| | Sbjct 37218 GAGTCTGAGAACTAAATGGAGGGTTGATTCCTTTTGGATGTTGTAATCTTGTAAAGTACG 37277 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 |||||||| | || ||||| || |||||||||| |||||| || || || || ||||| Sbjct 37278 ACCATCTTCTAATTGTTTACCAGCAAAGATAAGTCTTTGTTGATCGGGGGGGATACCTTC 37337 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 ||||||||| ||||| ||||||||| || |||||||| || | || ||||| || || Sbjct 37338 TTTGTCTTGGATTTTAGCCTTGACGTTTTCGATGGTGTCTGATCCCTCTACTTCGAGAGT 37397 Query 195102 AACCGTCTTTCCT 195114 || |||||| ||| Sbjct 37398 AATCGTCTTACCT 37410 >seq339 Length=35222 Score = 91.5 bits (100), Expect = 3e-13 Identities = 93/121 (77%), Gaps = 3/121 (2%) Strand=Plus/Minus Query 195034 ATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACT 195093 || |||||||||||||| ||||| |||||| || || |||||||| |||| ||| ||| Sbjct 20951 ATACCTTCTTTGTCTTGGATTTTAGCCTTGACATTTTCGATGGTGTCAGAACCTTCTACT 20892 Query 195094 TCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCA---TTTATGGTTAC 195150 || | ||| | || ||||| || || ||||| ||||| | ||||| ||||| |||| Sbjct 20891 TCTAAGGTGATGGTTTTTCCGGTTAAGGTTTTAACGAAGATTTGCATGCTTTATTATTAC 20832 Query 195151 T 195151 | Sbjct 20831 T 20831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109371090778658