Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_016158.1 Length=49576 Score E Sequences producing significant alignments: (Bits) Value seq1335 201 4e-47 seq915 113 1e-20 seq1340 95.1 4e-15 >seq1335 Length=14169 Score = 201 bits (222), Expect = 4e-47 Identities = 262/362 (72%), Gaps = 3/362 (1%) Strand=Plus/Minus Query 39215 AACACCGACTGGGCTTATGGGGTGATTCGATGAAATCTCTTGCAGAGCAGATGCGTAACC 39274 ||||| |||||| ||| |||||| | |||||| | || | |||||| |||| Sbjct 3236 AACACTGACTGGATTTACGGGGTGGATTTATGAAAAACATCGCCGCACAGATGGTTAACT 3177 Query 39275 ACGACCGCGAGCAGATGAGCCGCATGGCCCATAACCTGCCAGAGCAGTACCAGGAGCGTG 39334 ||||| ||||||||| | || || ||| | ||| |||| || |||||| | || Sbjct 3176 TTGACCGTGAGCAGATGCGTCGGATCGCCAACAACATGCCGGAACAGTACGACGAAAAGC 3117 Query 39335 CGCCGGTCGAACAAGTGGCGCAGGTATTCAACAAGCTGTTCAACGAGCTGCGCGCCGCTT 39394 ||| ||| |||| || |||||| | ||||| |||||| | || | | || ||| Sbjct 3116 CGCAGGTACAACAGGTAGCGCAGATCATCAACGGTGTGTTCAGCCAGTTACTGGCAACTT 3057 Query 39395 TCCCGGCCAGTATGGCAAACTTCCGCACCCAGGATGACCTGAACGAATTCCGCCGTCAGT 39454 ||||||| || |||| ||| || |||| |||| ||||||||| ||||||| |||| Sbjct 3056 TCCCGGCGAGCCTGGCTAAC---CGTGACCAGAATGAACTGAACGAAATCCGCCGCCAGT 3000 Query 39455 GGCTGCTGGCGTTTCAGGAGAACGGGATCCACACCATGGCTCAGGTCGATGCCGGCATGC 39514 || | ||||| || | ||| ||||||||| ||| |||| ||||| | || || |||| Sbjct 2999 GGGTTCTGGCTTTCCGGGAAAACGGGATCACCACAATGGAACAGGTTAACGCAGGAATGC 2940 Query 39515 GTGTAGCTCGCCGCCAGGAGCGTCCATTCCTGCCGTCTCCGGGCCAGTTCGTCGCCTGGT 39574 | ||||| || || ||| | || ||||||||||| || || || ||||| |||||||||| Sbjct 2939 GCGTAGCCCGTCGGCAGAATCGACCATTCCTGCCATCACCCGGGCAGTTTGTCGCCTGGT 2880 Query 39575 GC 39576 || Sbjct 2879 GC 2878 Score = 147 bits (162), Expect = 7e-31 Identities = 148/188 (79%), Gaps = 6/188 (3%) Strand=Plus/Minus Query 42240 TTTGATTTTCTGGAATCAAACCGCCATAATCATGTCATCGGAGCCTGAACAACTCCGGTG 42299 |||||||||| |||||| | |||||| | |||| ||||| ||||| |||||||| Sbjct 395 TTTGATTTTCAATAATCAACTTGTCATAATTAAGTCACCGGAGTTTGAACTCCTCCGGTG 336 Query 42300 ACTTCTGCGCATTTAAGGGGACTTAAATGCGACCA--CAATCTGAACTCC--TCACCTTG 42355 |||||||||| | | |||||| | ||||| || ||||| ||||| || || | Sbjct 335 ACTTCTGCGC-TAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCT- 278 Query 42356 TCACAGATGCAGAAATGCACCTGCGATTTTCTGCATTCTGCGTTTGACCTCTTCGGAGGT 42415 ||||||||||||||||||||||||||| | ||||| | |||||||| |||| ||||||| Sbjct 277 TCACAGATGCAGAAATGCACCTGCGATATCTTGCATCCAGCGTTTGATCTCTGCGGAGGT 218 Query 42416 GAAGCGTG 42423 |||||||| Sbjct 217 GAAGCGTG 210 >seq915 Length=38681 Score = 113 bits (124), Expect = 1e-20 Identities = 179/256 (70%), Gaps = 2/256 (1%) Strand=Plus/Plus Query 46196 AAAAGAACCTGGGCAACCAGGTTGCTGGTGATGGCTGGAAATATCGCGGTCGCGGCCTGA 46255 ||||||| |||| ||| | | | | ||| |||||| || | ||| ||||| || | Sbjct 37784 AAAAGAA--TGGGGAACAACGGTCCGACTGACGGCTGGTTTTACCTCGGGCGCGGGCTTA 37841 Query 46256 AGCAAATCACCGGGCTCAGCAATTACCGCAACTGTGGCCACGCGCTGAAGTTGGACCTTG 46315 || ||||||||||| | ||| || ||| |||| ||| | | |||||| |||| || | Sbjct 37842 TCCAGATCACCGGGCTGAACAACTATCGCGACTGCGGCAATGGCCTGAAGGTGGATCTGG 37901 Query 46316 TAACCCAGCCTGAATTGCTGGAACAGGATGAATATGCTGCGCGCTCCGCTGCATGGTTCT 46375 | | |||||||| |||||| ||||| ||||| || || ||| ||| || ||||||| Sbjct 37902 TTAAGCAGCCTGAGCTGCTGGCGCAGGACGAATACGCGGCCCGCAGCGCGGCGTGGTTCT 37961 Query 46376 ATGTCTCGCACGGATGCCTGCTCCATTCCGGCGACGTGGAGCGCGTGACGCTGCTTATCA 46435 | | | || ||| || | |||||||| ||| |||||| |||| | | |||| Sbjct 37962 TCGCAACCAAAGGCTGCATGAAGTACACCGGCGACCTGGTGCGCGTCACGCAGATCATCA 38021 Query 46436 ACGGCGGCCGTAACGG 46451 | || || | ||||| Sbjct 38022 ATGGTGGGCAGAACGG 38037 Score = 91.5 bits (100), Expect = 5e-14 Identities = 119/163 (73%), Gaps = 4/163 (2%) Strand=Plus/Plus Query 45898 GCGGCAGGTATAAGCGCCGGTCTAGCCGTGCGCTGGTTTCACTATATCGATGCTGCAATG 45957 || || ||||| || | | || ||| |||||||| || ||||| || |||||| Sbjct 37487 GCCGCCGGTATCAGTGAGGTGCTGGCCACGCGCTGGTATCTGCATATCACCGCGGCAATG 37546 Query 45958 AAGGAATTCGGCAT--AACCGCGCCGCTCGATCAGGCCATGTTTATCGCGCAGATGGGCC 46015 || || || ||||| ||| | |||| | ||||| ||||||||||||||| | || | Sbjct 37547 AAAGAGTTTGGCATCGAACAAC--CGCTGCACCAGGCGATGTTTATCGCGCAGGTCGGGC 37604 Query 46016 ACGAGTCCGGCGGCTTCACCCGGCTGGTGGAAAACCTGAACTA 46058 | ||||| |||||| ||||||||| ||||||| | ||||| Sbjct 37605 ATGAGTCTACCGGCTTTACCCGGCTGCAGGAAAACTTCAACTA 37647 >seq1340 Length=18762 Score = 95.1 bits (104), Expect = 4e-15 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 12181 GCTGGAATCTCCGTTGGTCAGTACAGCGCAGCAATGCGTACGCTTCCGGCTCAGTTCACG 12240 || || || ||||| || ||||| | || || ||||||| ||| || || |||||||| Sbjct 8931 GCGGGGATTTCCGTCGGGCAGTATAAAGCCGCCATGCGTATGCTGCCTGCACAGTTCACC 8872 Query 12241 GATATCGCCACGCAGTTAGCTGGTGGGCAGTCGCCGTTCCTGATTCTGCTGCAACAGGGC 12300 || | ||||||||| | || || ||||| |||| ||||| |||||||||||||| Sbjct 8871 GACGTGGCCACGCAGCTTGCAGGCGGGCAAAGTCCGTGGCTGATCCTGCTGCAACAGGGT 8812 Query 12301 GGGCAGATTAAAGAC 12315 || ||| |||| ||| Sbjct 8811 GGTCAGGTTAAGGAC 8797 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 158506965880344