Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_016160.1 Length=36661 Score E Sequences producing significant alignments: (Bits) Value seq3699 194 4e-45 seq2008 156 1e-33 seq4808 89.7 1e-13 seq2982 89.7 1e-13 >seq3699 Length=658 Score = 194 bits (214), Expect = 4e-45 Identities = 206/271 (76%), Gaps = 23/271 (8%) Strand=Plus/Plus Query 34898 ATGAGCAGAGTCACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCTGCCTGTCA 34957 |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 374 ATGAACAGAGTAACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCTGCCTGTCA 433 Query 34958 TGGGCGGTTAATCATTACCGTGATAACGCCATCTCCTACAAAGAGCAGCGCGATAAA--- 35014 ||||| |||||||||||||||||||||||||| ||||||||| |||||||| ||| Sbjct 434 TGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAAT 493 Query 35015 GCCACA----TCCATC--------------ATCGCTGATATGCAGAAGCGTCAACGTGAT 35056 |||| | | | | || |||| ||||||| ||| || |||||| Sbjct 494 GCCAGAGAACTGAAGCTGGCGAACGCGGCAATTACTGACATGCAGATGCGCCAGCGTGAT 553 Query 35057 GTAGCAGAACTCGACGCCAGATACACAAAGGAGCTTGCTGATGCTAACGC-GACTATCGA 35115 || || | ||| || | | |||||| |||||| | ||| |||| || || || || || Sbjct 554 GTTGCTGCACTGGATGAAAAATACACGAAGGAGTTAGCTAATGCGAAAGCTGAAAAT-GA 612 Query 35116 AAGTCTCCGTGCTGATGTTTCTGCTGGTCGT 35146 ||| |||| || |||| | ||||||||| Sbjct 613 TGCTCTGCGTGATGGTGTTGCCGCTGGTCGT 643 >seq2008 Length=9006 Score = 156 bits (172), Expect = 1e-33 Identities = 343/505 (68%), Gaps = 12/505 (2%) Strand=Plus/Plus Query 12683 CGATCCGTCGCTGGATGAATGCAATGGCACGCTGACGGCCTGCAAACTCCGATTCGGCGA 12742 ||| ||| | ||||| | ||||| ||| ||| | ||||||| | || |||||||| Sbjct 3807 CGACCCGGCCCTGGACCAGTGCAAGGGCTGCCTGTCTTCCTGCAAGTTACGCTTCGGCGA 3866 Query 12743 AAATAACGAACTCTCGTTTGGTGGCTTCCCTGGTACGTCGCTGAT---CAGGAGTTGA-T 12798 | ||||||||||| || || || ||||| | ||| ||||| | |||| ||| Sbjct 3867 GTACAACGAACTCTCCTTCGGCGGATTCCCCGCCGTGTCCCTGATAGCCCGGAGCTGACC 3926 Query 12799 ATGCGTCAGAAAACCATCGATGCGATTATGGCGCATGCTGCAGCTGAATATCCTCGTGAG 12858 ||||| || | | ||| | ||||| ||||||||| ||||| || ||||| ||| Sbjct 3927 ATGCGCAAGCACATCATTGCGGCGATCCAGGCGCATGCGGCAGCGGAGTATCCGAAAGAG 3986 Query 12859 TGTTGCGGCGTGGTG-GCGCAAAAGAGCCGGGTAGAGAAATATTTTCCATGTAGTAACCT 12917 || ||||| || || || || | |||| |||| || || || || | ||| | Sbjct 3987 TGCTGCGGGCTGCTGCTGGCTGTAG-GGCGGGCGCAGAAGTACTTCCCGTGCCGGAACAT 4045 Query 12918 CGCTACCGAGCCGACAGAACATTTTCACCTGTCGCCAGAAGACTATGCAGCTGCTGAGGA 12977 ||| || ||||||| ||| | |||| || || || ||||| || || || ||||| Sbjct 4046 CGCCACGGAGCCGAACGAAGAGTTTCGACTTGATCCTGAGGACTACGCTGCAGCGGAGGA 4105 Query 12978 CTGGGGTACGGTGATCGCCATCGTTCACAGTCACCCTGACGCCACAACGCAGCCG--AGC 13035 | ||| ||||||| || |||||| ||||| |||||||| | | |||| | | Sbjct 4106 CCTGGGCGAAGTGATCGGTATTGTTCACTCGCACCCGGACGCCACCAGCCGGCCGTCACC 4165 Query 13036 GAACTGGATAAAGCGCAATGCGACGCAACGCTTTTACCCTGGCATATTGTGAGCTGGCCG 13095 | || || || ||||| || || || |||||||| ||| || ||||| Sbjct 4166 GCAC--GACCTGGCCATGTGCGAGGCCACCGCCTTGCCCTGGCACATTCTGTCGTGGCCC 4223 Query 13096 GATGGGGATTTACGCACCATCCAGCC-GCGCGGAGAACTGCCACTGCTGGAGCGTCCGTT 13154 || |||||||| || || ||| ||| || | || || ||||||||| |||| ||||| Sbjct 4224 GAGGGGGATTTGCGGACGATCACGCCAACGGGCAGCAC-GCCACTGCTCAAGCGGCCGTT 4282 Query 13155 TGTGCTTGGACACTTCGACTGCTGG 13179 ||| | ||| || ||||||||| Sbjct 4283 TGTACATGGCGCCTGGGACTGCTGG 4307 Score = 98.7 bits (108), Expect = 2e-16 Identities = 197/292 (67%), Gaps = 0/292 (0%) Strand=Plus/Plus Query 15788 GCGGTACGGCTTCAATCAGCTGGAAATGACAGCCATCGGCTGCACCAGGCAGTCAGAGGC 15847 ||| |||||| || | |||||| || | || ||||||||||| | |||| ||||| Sbjct 8645 GCGCTACGGCGATAACCCGCTGGAGATCAGCGCGATCGGCTGCACGCGTGAGTCTGAGGC 8704 Query 15848 GAACCGAAAGGGGCGCTGGGGTATTCTCACCAATAACAAGGATCGCGTTGTTTCGTTTGA 15907 | | || || |||| | |||||||| |||||| || | || ||||| Sbjct 8705 GCAGCGCCGCGGCAAGTGGGCGTTGCTCACCAACTCCAAGGACCGGGCGGTAACGTTTCG 8764 Query 15908 TGTCGGGCTGGACGGAAACATTCCGCAGCCTGGCTACATCATCGCCGTGGCAGACGAGCT 15967 |||||| ||||||||| || || | |||||||||| || | | | || ||||| || Sbjct 8765 TGTCGGCCTGGACGGACGTATCCCTCTGCCTGGCTACGTCGTTCCGATCGCTGACGAACT 8824 Query 15968 GCTTTCCGGAAAGGTTATGGGCGGCCGCATCAGCGCCGTTAACGGTCGCGTTATCAAACT 16027 ||| |||| | |||| || |||||| ||||| ||||| || |||| || Sbjct 8825 GCTGGCCGGTCGGCCCGTGGGTGGGCGCATCTCAGCCGTAAACGGCAAAGTCATCACCCT 8884 Query 16028 TGACCGCGTAGCTGATGCAGCACCAGGTGATCGCCTTATTCTCAACCTTCCC 16079 ||||||| | | || ||| ||||| || || || |||||||| ||| Sbjct 8885 GGACCGCGACACCCAGGCCAAACCCGGTGACCGGCTGATCCTCAACCTGCCC 8936 >seq4808 Length=2437 Score = 89.7 bits (98), Expect = 1e-13 Identities = 73/86 (85%), Gaps = 2/86 (2%) Strand=Plus/Minus Query 21049 TCCTATTATCGGCACCATTTAAATCAATAAGTTACCTAGCATTTAAGTAAACTACGTTCT 21108 ||||||||||| ||||||| ||||||| ||||||| |||||| || || ||||| | Sbjct 138 TCCTATTATCG-CACCATTAAAATCAAAGAGTTACCCCATATTTAAATACACCACGTT-T 81 Query 21109 CCTCTTGTGCCGTATTTGTGCCATTG 21134 |||| ||||||||||||||||||||| Sbjct 80 CCTCCTGTGCCGTATTTGTGCCATTG 55 >seq2982 Length=1456 Score = 89.7 bits (98), Expect = 1e-13 Identities = 51/52 (98%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 21020 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTTAAA 21071 ||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 86 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTTCAA 137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117182781126324