Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_016762.1 Length=49135 Score E Sequences producing significant alignments: (Bits) Value seq2461 174 5e-39 seq6260 168 2e-37 seq3418 118 3e-22 seq2455 113 1e-20 seq385 91.5 5e-14 seq1412 84.2 7e-12 >seq2461 Length=11543 Score = 174 bits (192), Expect = 5e-39 Identities = 202/271 (75%), Gaps = 6/271 (2%) Strand=Plus/Plus Query 21313 CCCCGTGATCGTGCTGTCGCAGCTCAACCGCTCCCTGGAGCAGCGGCCGAACAAGCGACC 21372 ||| ||| | | ||||||||||||||||| || || |||||||| |||||||| || || Sbjct 8677 CCCGGTGGTTGCCCTGTCGCAGCTCAACCGATCTCTTGAGCAGCGTCCGAACAAACGCCC 8736 Query 21373 GATGATGTCGGACCTGCGCGAGTCCGGGGCGATCGAGCAGGACGCCGATGTGATCATGTT 21432 ||| | || ||| |||| || ||||| |||||||||||||| || || ||||||||||| Sbjct 8737 GATCAACTCCGACTTGCGGGAATCCGGAGCGATCGAGCAGGATGCTGACGTGATCATGTT 8796 Query 21433 CGTGTACCGCGACGAGGTCTACCACCCGGATACCCAGTACCGCGGCGTGGCTGAGTTGAT 21492 ||| ||||| |||||||| || |||||||| ||| || | ||| | ||||| | || Sbjct 8797 CGTATACCGGGACGAGGTGTATCACCCGGAGACCGAGCATAAAGGCATCGCTGAAATCAT 8856 Query 21493 CATCGCGAAGCACCGCAACGGCGAGCCAA---GCACTGTTCGGTGCGCGTTCCTGGGTAA 21549 |||| || || || ||||| ||||| |||| || || ||| | ||||| Sbjct 8857 TATCGGTAAACAGCGTAACGG---GCCAATCGGCACCACGCGCCTGGCCTTCATCGGTAA 8913 Query 21550 GTACTCGCGATTCGAGCAGCTCGCTCCGGGC 21580 ||| | || |||||| | || || |||||| Sbjct 8914 ATACACCCGCTTCGAGAACCTGGCGCCGGGC 8944 >seq6260 Length=2033 Score = 168 bits (186), Expect = 2e-37 Identities = 263/370 (71%), Gaps = 7/370 (2%) Strand=Plus/Minus Query 21207 TGGTGGACTACCTGCAGCTGCTGGAGAGCTCCGG---CAAGTCCACTCGCACCGAGGACG 21263 |||| || |||||||||||| || || | || | || | ||||| |||| | Sbjct 1789 TGGTTGATTACCTGCAGCTGATGCGCTGCCCAGGCTACGAGGGGAACCGCACTCAGGAGG 1730 Query 21264 TCAGCGACATGTCCC-GCCAGTGCAAGCTGCTGGCGATGGAGCTTGGTATCCCCGTGATC 21322 || || || |||| | || || ||| | |||| | ||| | | |||||| ||| Sbjct 1729 TCGCGGAGATCTCCCGGGCATTG-AAGGGGTTGGCCAAAGAGTTCAATTGCCCCGTCATC 1671 Query 21323 GTGCTGTCGCAGCTCAACCGCTCCCTG-GAGCAGCGGCCGAACAAGCGACCGATGATGTC 21381 | ||| |||||| | |||| | || ||||||||||| |||||||| || ||| | Sbjct 1670 GCGCTATCGCAGTTGTCCCGC-CAGTGTGAGCAGCGGCCCAACAAGCGCCCTGTGAACGC 1612 Query 21382 GGACCTGCGCGAGTCCGGGGCGATCGAGCAGGACGCCGATGTGATCATGTTCGTGTACCG 21441 ||| |||| |||||||| ||||||||||||||||| || | ||||||||||| || || Sbjct 1611 AGACTTGCGGGAGTCCGGCGCGATCGAGCAGGACGCGGACATCATCATGTTCGTCTATCG 1552 Query 21442 CGACGAGGTCTACCACCCGGATACCCAGTACCGCGGCGTGGCTGAGTTGATCATCGCGAA 21501 |||||||||||| ||||||| || ||||| || || || ||||||||| ||| || Sbjct 1551 AGACGAGGTCTACAACCCGGACACTGAGTACAAGGGGGTTGCCGAGTTGATCCTCGGCAA 1492 Query 21502 GCACCGCAACGGCGAGCCAAGCACTGTTCGGTGCGCGTTCCTGGGTAAGTACTCGCGATT 21561 |||||| ||||| || | | || || ||| |||||| | || ||| | | || || Sbjct 1491 GCACCGGAACGGTGAAACCGGTACCGTGCGGACCGCGTTTATTGGCAAGGAAACTCGTTT 1432 Query 21562 CGAGCAGCTC 21571 | || |||| Sbjct 1431 TGTGCCGCTC 1422 >seq3418 Length=564 Score = 118 bits (130), Expect = 3e-22 Identities = 103/128 (80%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 21326 CTGTCGCAGCTCAACCGCTCCCTGGAGCAGCGGCCGAACAAGCGACCGATGATGTCGGAC 21385 ||||| ||||| ||||| || |||||| | || ||||| || || ||| ||||||| ||| Sbjct 295 CTGTCACAGCTTAACCGATCGCTGGAGAACCGTCCGAATAAACGTCCGGTGATGTCCGAC 354 Query 21386 CTGCGCGAGTCCGGGGCGATCGAGCAGGACGCCGATGTGATCATGTTCGTGTACCGCGAC 21445 |||| || ||||| |||||||||||||| ||||| |||||||||| | ||||| || Sbjct 355 TTGCGTGAATCCGGTGCGATCGAGCAGGATGCCGACTTGATCATGTTTATTTACCGGGAT 414 Query 21446 GAGGTCTA 21453 ||||| || Sbjct 415 GAGGTTTA 422 >seq2455 Length=6332 Score = 113 bits (124), Expect = 1e-20 Identities = 113/147 (77%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 21313 CCCCGTGATCGTGCTGTCGCAGCTCAACCGCTCCCTGGAGCAGCGGCCGAACAAGCGACC 21372 ||| ||| | | ||| || ||||||||||| ||||||| ||||| || ||||| || Sbjct 4552 CCCGGTGGTTGCGCTTTCCCAGCTCAACCGAGAACTGGAGCGACGGCCAAATAAGCGTCC 4611 Query 21373 GATGATGTCGGACCTGCGCGAGTCCGGGGCGATCGAGCAGGACGCCGATGTGATCATGTT 21432 ||| | | |||||||| || ||| ||||| || |||||||| || |||| ||||| Sbjct 4612 GATCAACGCAGACCTGCGTGATAGCGGTGCGATTGAACAGGACGCGGACCTGATTATGTT 4671 Query 21433 CGTGTACCGCGACGAGGTCTACCACCC 21459 ||| ||||| |||||||| |||||||| Sbjct 4672 CGTCTACCGGGACGAGGTGTACCACCC 4698 >seq385 Length=624889 Score = 91.5 bits (100), Expect = 5e-14 Identities = 99/129 (77%), Gaps = 2/129 (2%) Strand=Plus/Plus Query 21320 ATCGTGCTGTCGCAGCTCAACCGCTCCCTGGAGCAGCGGCCGA-ACAAGCGACCGATGAT 21378 |||| |||||| |||||| ||| |||| ||| || | ||||||| ||| | | Sbjct 599038 ATCGCGCTGTCACAGCTCTCCCGTCAGGTGGAA-AGCCGCGAAGACAAGCGCCCGCAGCT 599096 Query 21379 GTCGGACCTGCGCGAGTCCGGGGCGATCGAGCAGGACGCCGATGTGATCATGTTCGTGTA 21438 || |||||||| || |||||| ||||||||||||||||||| ||| | || ||||| || Sbjct 599097 CTCCGACCTGCGTGAATCCGGGTCGATCGAGCAGGACGCCGACGTGGTGATCTTCGTTTA 599156 Query 21439 CCGCGACGA 21447 |||||||| Sbjct 599157 TCGCGACGA 599165 >seq1412 Length=10105 Score = 84.2 bits (92), Expect = 7e-12 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 47536 ACAGGATTTAGGTTCCAGCGCCGCAAGGCGTGAGAGTTCGAGTCTCTCCGTCCGCACCA 47594 || ||||||||||||||||||||||||| || ||||||||||||||| | ||||||||| Sbjct 1636 ACTGGATTTAGGTTCCAGCGCCGCAAGGTGTAAGAGTTCGAGTCTCTTCATCCGCACCA 1578 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 157095896157036